Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AC114774.1-201ENST00000507410 1770 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.49□□□□□ -1.53
TDP1Q9NUW8 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
TDP1Q9NUW8 ZNF542P-204ENST00000482727 1305 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 DCAF13P3-201ENST00000561147 1334 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AL355852.1-201ENST00000454081 1771 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC079097.1-201ENST00000512187 1399 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC025263.3-201ENST00000622965 1396 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 HMGB1P5-201ENST00000255320 642 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 RNU1-146P-201ENST00000364015 165 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AL590290.1-201ENST00000405336 380 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AL139128.1-201ENST00000413921 941 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 DPRXP1-201ENST00000426312 460 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC009784.1-201ENST00000426484 460 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 RBMY2QP-201ENST00000429799 1147 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AP000936.3-201ENST00000438127 255 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 UBE2V1P5-201ENST00000440070 405 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 TXNP5-201ENST00000441043 315 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC092809.1-201ENST00000441469 474 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 RPS7P5-201ENST00000441482 581 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC092647.2-201ENST00000452998 253 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 RPL7AP52-201ENST00000458096 790 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 RAP1BP2-201ENST00000478270 544 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 NAA50-206ENST00000493454 964 ntTSL 2 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 WBP1LP4-201ENST00000505043 344 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 IGBP1P5-201ENST00000507524 1000 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC091912.1-201ENST00000511351 248 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC004980.4-201ENST00000513375 203 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC110775.1-201ENST00000513721 462 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC012400.1-201ENST00000518452 381 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC138832.1-201ENST00000522871 556 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC122134.1-201ENST00000565664 1104 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 MTCYBP28-201ENST00000566728 1132 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC005951.1-201ENST00000576706 485 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 OR2AS2P-201ENST00000606902 342 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AP001784.1-201ENST00000624107 428 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC015726.3-201ENST00000624501 418 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 ATE1-AS1-202ENST00000636460 506 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 AC138907.8-201ENST00000623981 2256 ntBASIC5.48□□□□□ -1.53
TDP1Q9NUW8 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms