Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 OR2M1P-201ENST00000318104 951 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 RNU1-130P-201ENST00000363930 160 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 RNVU1-3-201ENST00000364313 161 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 Y_RNA.813-201ENST00000364639 102 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 UBBP1-201ENST00000392399 473 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL034417.1-201ENST00000399343 800 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL359694.1-201ENST00000403247 604 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL096800.1-201ENST00000405326 893 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 ZNF37CP-201ENST00000406795 241 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 RNU2-9P-201ENST00000410194 145 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL672212.1-201ENST00000422246 400 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AHCYP8-201ENST00000425108 209 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 RPL3P11-201ENST00000434028 1146 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 CEACAMP1-201ENST00000434624 1035 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL731534.1-201ENST00000434711 269 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC011742.2-201ENST00000443818 352 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 CCDC13-AS1-202ENST00000446950 554 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 FDX1P2-201ENST00000450769 375 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 ELOCP23-201ENST00000452014 332 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 TREML3P-201ENST00000457327 501 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 RPS4XP10-201ENST00000465034 731 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC012123.2-201ENST00000485809 248 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 RPL23AP72-201ENST00000492447 435 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC063943.2-201ENST00000495697 534 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC016065.2-201ENST00000514530 444 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC093878.1-201ENST00000515630 432 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 SNORA81.2-201ENST00000516868 170 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 RNU4ATAC10P-201ENST00000516967 122 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC022616.3-201ENST00000523940 148 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 PHBP2-201ENST00000532859 806 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC007068.2-201ENST00000543168 395 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC091078.2-201ENST00000557145 559 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC010287.1-201ENST00000566916 357 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 MDFIC2-201ENST00000567252 778 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC106785.4-201ENST00000569492 412 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC004034.1-201ENST00000573260 510 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 RPS4XP21-201ENST00000603814 750 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC025449.1-201ENST00000603896 529 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC087283.1-201ENST00000604029 1074 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL359704.2-201ENST00000604335 521 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL035413.2-201ENST00000604801 525 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 BNIP3P10-201ENST00000605360 577 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC008966.2-201ENST00000606157 453 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL352984.2-201ENST00000611153 546 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC009161.2-201ENST00000624626 138 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AL122126.1-201ENST00000546905 1318 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 AC130304.1-201ENST00000622942 2385 ntBASIC5.19□□□□□ -1.58
CCDC140Q96MF4 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC140Q96MF4 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RAD17P2-201ENST00000451754 1977 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC007012.2-201ENST00000623206 1676 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC006210.2-201ENST00000367074 1545 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 CAST-202ENST00000325674 3356 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RNA5SP258-201ENST00000362750 119 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 Y_RNA.86-201ENST00000363020 111 ntBASIC5.18□□□□□ -1.58
CCDC140Q96MF4 RNA5SP382-201ENST00000363355 112 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms