Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC7.09□□□□□ -1.27
RFX1P22670 AC099340.1-201ENST00000475247 599 ntBASIC7.09□□□□□ -1.27
RFX1P22670 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
RFX1P22670 FTH1P8-201ENST00000498161 514 ntBASIC7.09□□□□□ -1.27
RFX1P22670 STMN1P2-201ENST00000508435 439 ntBASIC7.09□□□□□ -1.27
RFX1P22670 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC7.09□□□□□ -1.27
RFX1P22670 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC7.09□□□□□ -1.27
RFX1P22670 SCARNA5-201ENST00000516201 276 ntBASIC7.09□□□□□ -1.27
RFX1P22670 RNU6-347P-201ENST00000516658 105 ntBASIC7.09□□□□□ -1.27
RFX1P22670 RNA5SP441-201ENST00000516809 88 ntBASIC7.09□□□□□ -1.27
RFX1P22670 FAM92A1P1-201ENST00000528023 890 ntBASIC7.09□□□□□ -1.27
RFX1P22670 EIF4A2P5-201ENST00000529914 499 ntBASIC7.09□□□□□ -1.27
RFX1P22670 AP003122.4-201ENST00000530980 758 ntBASIC7.09□□□□□ -1.27
RFX1P22670 AL512310.1-201ENST00000548639 172 ntBASIC7.09□□□□□ -1.27
RFX1P22670 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC7.09□□□□□ -1.27
RFX1P22670 AC012146.2-201ENST00000576545 416 ntBASIC7.09□□□□□ -1.27
RFX1P22670 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC7.09□□□□□ -1.27
RFX1P22670 CKS1BP3-201ENST00000600888 237 ntBASIC7.09□□□□□ -1.27
RFX1P22670 AC245014.2-201ENST00000603689 287 ntBASIC7.09□□□□□ -1.27
RFX1P22670 AL049634.3-201ENST00000604968 457 ntBASIC7.09□□□□□ -1.27
RFX1P22670 AC246785.4-201ENST00000605374 287 ntBASIC7.09□□□□□ -1.27
RFX1P22670 ACTR3BP1-201ENST00000605584 1247 ntBASIC7.09□□□□□ -1.27
RFX1P22670 AP003117.2-201ENST00000606010 545 ntBASIC7.09□□□□□ -1.27
RFX1P22670 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC7.09□□□□□ -1.27
RFX1P22670 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC7.09□□□□□ -1.27
RFX1P22670 MIR6862-1-201ENST00000613016 70 ntBASIC7.09□□□□□ -1.27
RFX1P22670 MIR6862-2-201ENST00000614755 70 ntBASIC7.09□□□□□ -1.27
RFX1P22670 MIR6729-201ENST00000618194 65 ntBASIC7.09□□□□□ -1.27
RFX1P22670 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC7.09□□□□□ -1.27
RFX1P22670 U6.101-201ENST00000637707 76 ntBASIC7.09□□□□□ -1.27
RFX1P22670 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
RFX1P22670 FER-202ENST00000438717 1531 ntTSL 2 BASIC7.09□□□□□ -1.27
RFX1P22670 CDH12-208ENST00000522262 3028 ntTSL 2 BASIC7.09□□□□□ -1.27
RFX1P22670 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC7.09□□□□□ -1.27
RFX1P22670 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
RFX1P22670 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC7.09□□□□□ -1.27
RFX1P22670 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
RFX1P22670 AL022578.1-201ENST00000439330 1433 ntBASIC7.09□□□□□ -1.28
RFX1P22670 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC7.09□□□□□ -1.28
RFX1P22670 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC7.09□□□□□ -1.28
RFX1P22670 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.28
RFX1P22670 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
RFX1P22670 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC7.08□□□□□ -1.28
RFX1P22670 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC7.08□□□□□ -1.28
RFX1P22670 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC7.08□□□□□ -1.28
RFX1P22670 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 ST6GALNAC3-201ENST00000328299 6861 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC7.08□□□□□ -1.28
RFX1P22670 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 QRSL1P1-201ENST00000400977 1540 ntBASIC7.08□□□□□ -1.28
RFX1P22670 AC009313.2-201ENST00000417893 1941 ntBASIC7.08□□□□□ -1.28
RFX1P22670 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 VTRNA3-1P-201ENST00000362552 102 ntBASIC7.08□□□□□ -1.28
RFX1P22670 Y_RNA.38-201ENST00000362617 102 ntBASIC7.08□□□□□ -1.28
RFX1P22670 RNU6-181P-201ENST00000363225 107 ntBASIC7.08□□□□□ -1.28
RFX1P22670 RNU6-1090P-201ENST00000364065 94 ntBASIC7.08□□□□□ -1.28
RFX1P22670 RNU6-289P-201ENST00000364093 107 ntBASIC7.08□□□□□ -1.28
RFX1P22670 MIR649-201ENST00000384843 97 ntBASIC7.08□□□□□ -1.28
RFX1P22670 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 MTCO1P17-201ENST00000411522 491 ntBASIC7.08□□□□□ -1.28
RFX1P22670 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC7.08□□□□□ -1.28
RFX1P22670 SPA17P1-201ENST00000416656 452 ntBASIC7.08□□□□□ -1.28
RFX1P22670 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC7.08□□□□□ -1.28
RFX1P22670 AC104837.2-201ENST00000427236 424 ntBASIC7.08□□□□□ -1.28
RFX1P22670 RPL12P16-201ENST00000431098 498 ntBASIC7.08□□□□□ -1.28
RFX1P22670 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC7.08□□□□□ -1.28
RFX1P22670 RPL36AP15-201ENST00000444514 266 ntBASIC7.08□□□□□ -1.28
RFX1P22670 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC7.08□□□□□ -1.28
RFX1P22670 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC7.08□□□□□ -1.28
RFX1P22670 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC7.08□□□□□ -1.28
RFX1P22670 AC090142.1-201ENST00000465776 462 ntBASIC7.08□□□□□ -1.28
RFX1P22670 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 AC087312.1-201ENST00000471411 480 ntBASIC7.08□□□□□ -1.28
RFX1P22670 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC7.08□□□□□ -1.28
RFX1P22670 AC011411.1-201ENST00000509592 876 ntBASIC7.08□□□□□ -1.28
RFX1P22670 AC034159.1-201ENST00000513885 583 ntBASIC7.08□□□□□ -1.28
RFX1P22670 AC008429.2-201ENST00000523057 864 ntBASIC7.08□□□□□ -1.28
RFX1P22670 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC7.08□□□□□ -1.28
RFX1P22670 ZNF705CP-201ENST00000530515 889 ntBASIC7.08□□□□□ -1.28
RFX1P22670 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.08□□□□□ -1.28
RFX1P22670 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC7.08□□□□□ -1.28
RFX1P22670 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC7.08□□□□□ -1.28
RFX1P22670 AC006512.2-201ENST00000543250 486 ntBASIC7.08□□□□□ -1.28
RFX1P22670 CENPUP2-201ENST00000555897 1186 ntBASIC7.08□□□□□ -1.28
RFX1P22670 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC7.08□□□□□ -1.28
RFX1P22670 MIR4502-201ENST00000580432 81 ntBASIC7.08□□□□□ -1.28
RFX1P22670 AC011497.2-201ENST00000600255 639 ntBASIC7.08□□□□□ -1.28
RFX1P22670 BNIP3P9-201ENST00000603714 553 ntBASIC7.08□□□□□ -1.28
RFX1P22670 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC7.08□□□□□ -1.28
RFX1P22670 MIR1321-201ENST00000637766 79 ntBASIC7.08□□□□□ -1.28
RFX1P22670 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC7.08□□□□□ -1.28
RFX1P22670 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
RFX1P22670 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC7.08□□□□□ -1.28
RFX1P22670 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
RFX1P22670 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms