Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC4P09017 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
HOXC4P09017 RN7SKP227-201ENST00000364445 330 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 RNU1-44P-201ENST00000384453 163 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AL512430.2-201ENST00000406786 339 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AL160275.2-201ENST00000412010 394 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 RPL21P108-201ENST00000413857 481 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AC092017.2-201ENST00000427600 362 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC4P09017 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC4P09017 MTND4LP12-201ENST00000448237 295 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC4P09017 RNU6-775P-201ENST00000459318 96 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC4P09017 RPL5P30-201ENST00000465511 891 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AL133372.1-201ENST00000493565 745 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 RPS4XP18-201ENST00000495480 763 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AC021146.3-201ENST00000511911 260 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 RN7SKP21-201ENST00000516503 220 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AC018442.3-201ENST00000523025 183 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC4P09017 AL352979.3-201ENST00000553515 247 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 GLRXP2-201ENST00000555594 321 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC4P09017 CD24P2-201ENST00000565486 219 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC4P09017 AC010615.3-201ENST00000597319 394 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.27□□□□□ -1.73
HOXC4P09017 AC023043.4-201ENST00000612081 449 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AP003497.2-201ENST00000624220 967 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 FP325313.1-201ENST00000638228 703 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC4P09017 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXC4P09017 AC068254.2-201ENST00000623938 3577 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.27□□□□□ -1.73
HOXC4P09017 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
HOXC4P09017 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
HOXC4P09017 AC005261.4-201ENST00000600047 1385 ntBASIC4.27□□□□□ -1.73
HOXC4P09017 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXC4P09017 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC4P09017 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.26□□□□□ -1.73
HOXC4P09017 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.26□□□□□ -1.73
HOXC4P09017 MIR383-201ENST00000362257 73 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 RNU1-14P-201ENST00000362759 152 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 MIR708-201ENST00000390708 88 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 RPS26P8-201ENST00000393490 348 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC4P09017 AC097374.1-203ENST00000400783 485 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC4P09017 RN7SKP235-201ENST00000410662 305 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 CEACAMP8-201ENST00000413902 580 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXC4P09017 RPL6P29-201ENST00000414863 865 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 OR2X1P-201ENST00000421144 687 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 AC004975.1-201ENST00000428733 208 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC4P09017 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC4P09017 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC4P09017 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC4P09017 BTF3P10-201ENST00000433415 495 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.26□□□□□ -1.73
HOXC4P09017 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC4P09017 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC4P09017 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC4P09017 RPL7AP52-201ENST00000458096 790 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 RPL35AP15-201ENST00000468042 339 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 AC007688.1-201ENST00000475592 759 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 AC090013.1-201ENST00000485147 480 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 AC108475.1-201ENST00000507880 950 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC4P09017 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC4P09017 KCTD9P2-201ENST00000512203 1013 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.26□□□□□ -1.73
HOXC4P09017 MRPL49P2-201ENST00000521066 465 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 NPM1P6-201ENST00000521088 871 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXC4P09017 ATP5J2P6-201ENST00000565203 266 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 AC006116.5-201ENST00000591936 559 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 AC096553.1-201ENST00000605169 829 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 Z98200.1-201ENST00000607298 470 ntBASIC4.26□□□□□ -1.73
HOXC4P09017 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC4P09017 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC4P09017 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXC4P09017 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.26□□□□□ -1.73
HOXC4P09017 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC4P09017 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
HOXC4P09017 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
HOXC4P09017 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC4P09017 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.26□□□□□ -1.73
HOXC4P09017 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
HOXC4P09017 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC4P09017 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC4P09017 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.25□□□□□ -1.73
HOXC4P09017 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXC4P09017 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HOXC4P09017 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXC4P09017 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms