Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.84□□□□□ -1.79
CHD3Q12873 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CHD3Q12873 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.84□□□□□ -1.8
CHD3Q12873 CYP1D1P-201ENST00000416662 1433 ntBASIC3.84□□□□□ -1.8
CHD3Q12873 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC3.84□□□□□ -1.8
CHD3Q12873 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC3.84□□□□□ -1.8
CHD3Q12873 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CHD3Q12873 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
CHD3Q12873 RNA5SP372-201ENST00000390836 115 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AC009237.5-201ENST00000414271 501 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC3.83□□□□□ -1.8
CHD3Q12873 TMSB10P2-201ENST00000416049 131 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 SLC4A1APP1-201ENST00000419995 602 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.83□□□□□ -1.8
CHD3Q12873 AC062016.2-201ENST00000420950 676 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC3.83□□□□□ -1.8
CHD3Q12873 AL358232.1-201ENST00000448030 501 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC3.83□□□□□ -1.8
CHD3Q12873 RPL7AP52-201ENST00000458096 790 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.83□□□□□ -1.8
CHD3Q12873 OR4A2P-201ENST00000527276 913 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CHD3Q12873 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC3.83□□□□□ -1.8
CHD3Q12873 AC012409.3-201ENST00000611343 981 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CHD3Q12873 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CHD3Q12873 AL158163.1-201ENST00000603915 1649 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.83□□□□□ -1.8
CHD3Q12873 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC3.83□□□□□ -1.8
CHD3Q12873 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC3.83□□□□□ -1.8
CHD3Q12873 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC3.83□□□□□ -1.8
CHD3Q12873 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CHD3Q12873 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CHD3Q12873 RNU1-83P-201ENST00000363426 164 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CHD3Q12873 MIR554-201ENST00000384874 96 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 MIR708-201ENST00000390708 88 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 RPL23AP59-201ENST00000399415 461 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AC097374.1-203ENST00000400783 485 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 RPL21P65-201ENST00000406094 466 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AL139039.2-201ENST00000407436 479 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 OR2X1P-201ENST00000421144 687 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC3.83□□□□□ -1.8
CHD3Q12873 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.83□□□□□ -1.8
CHD3Q12873 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.83□□□□□ -1.8
CHD3Q12873 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC3.83□□□□□ -1.8
CHD3Q12873 AC090589.1-201ENST00000473109 362 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 RN7SL132P-201ENST00000478131 296 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CHD3Q12873 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC3.83□□□□□ -1.8
CHD3Q12873 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC3.83□□□□□ -1.8
CHD3Q12873 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC3.83□□□□□ -1.8
CHD3Q12873 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.83□□□□□ -1.8
CHD3Q12873 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC3.83□□□□□ -1.8
CHD3Q12873 MIR3158-1-201ENST00000583596 81 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CHD3Q12873 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC3.83□□□□□ -1.8
CHD3Q12873 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.83□□□□□ -1.8
CHD3Q12873 RPL7P50-201ENST00000600588 727 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 COX6CP4-201ENST00000605798 228 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AC026979.4-201ENST00000606555 645 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AC090948.2-201ENST00000607363 564 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 SNORD91B-202ENST00000608459 222 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 SNX18P1Y-201ENST00000616231 511 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AL023881.1-201ENST00000621088 301 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 AP001005.3-201ENST00000622049 129 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CHD3Q12873 AC016588.2-201ENST00000632484 3021 ntBASIC3.83□□□□□ -1.8
CHD3Q12873 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
CHD3Q12873 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.83□□□□□ -1.8
CHD3Q12873 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
CHD3Q12873 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CHD3Q12873 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
CHD3Q12873 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHD3Q12873 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.82□□□□□ -1.8
CHD3Q12873 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHD3Q12873 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC3.82□□□□□ -1.8
CHD3Q12873 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.82□□□□□ -1.8
CHD3Q12873 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHD3Q12873 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CHD3Q12873 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CHD3Q12873 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.82□□□□□ -1.8
CHD3Q12873 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CHD3Q12873 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CHD3Q12873 AL590762.2-201ENST00000395798 571 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 AC008280.1-201ENST00000418851 412 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 EIF4EP1-201ENST00000422311 642 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 MRPL48P1-201ENST00000445390 636 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 RN7SL98P-201ENST00000462271 300 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 AC006499.6-201ENST00000511169 607 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 DYNLL1P4-201ENST00000549314 266 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.82□□□□□ -1.8
CHD3Q12873 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC3.82□□□□□ -1.8
CHD3Q12873 AC091178.1-203ENST00000584586 279 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 AC011477.5-201ENST00000586571 259 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.82□□□□□ -1.8
CHD3Q12873 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CHD3Q12873 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CHD3Q12873 AC092435.4-201ENST00000623012 4159 ntBASIC3.82□□□□□ -1.8
CHD3Q12873 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms