Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clp1Q99LI9 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clp1Q99LI9 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clp1Q99LI9 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clp1Q99LI9 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clp1Q99LI9 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Clp1Q99LI9 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
Clp1Q99LI9 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Gm7506-201ENSMUST00000207758 815 ntBASIC17.53■□□□□ 0.4
Clp1Q99LI9 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Clp1Q99LI9 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Clp1Q99LI9 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clp1Q99LI9 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Gm42670-201ENSMUST00000201816 1292 ntBASIC17.52■□□□□ 0.4
Clp1Q99LI9 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Clp1Q99LI9 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
Clp1Q99LI9 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.52■□□□□ 0.39
Clp1Q99LI9 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
Clp1Q99LI9 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Clp1Q99LI9 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Clp1Q99LI9 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Clp1Q99LI9 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Clp1Q99LI9 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC17.51■□□□□ 0.39
Clp1Q99LI9 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.51■□□□□ 0.39
Clp1Q99LI9 Gm27702-201ENSMUST00000184512 56 ntBASIC17.51■□□□□ 0.39
Clp1Q99LI9 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clp1Q99LI9 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.5■□□□□ 0.39
Clp1Q99LI9 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.5■□□□□ 0.39
Clp1Q99LI9 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clp1Q99LI9 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Clp1Q99LI9 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Clp1Q99LI9 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms