Protein–RNA interactions for Protein: Q91Y11

Pcdha9, Protocadherin alpha-9, mousemouse

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha9Q91Y11 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdha9Q91Y11 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Pcdha9Q91Y11 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Pcdha9Q91Y11 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Pcdha9Q91Y11 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Gm23634-201ENSMUST00000175071 91 ntBASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Gm5587-201ENSMUST00000206270 674 ntBASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Pcdha9Q91Y11 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Pcdha9Q91Y11 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Gm25016-201ENSMUST00000158399 131 ntBASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Pcdha9Q91Y11 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Pcdha9Q91Y11 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
Pcdha9Q91Y11 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
Pcdha9Q91Y11 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Pcdha9Q91Y11 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Pcdha9Q91Y11 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Pcdha9Q91Y11 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.64■□□□□ 0.41
Pcdha9Q91Y11 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.64■□□□□ 0.41
Pcdha9Q91Y11 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms