Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Clrn1Q8K445 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Clrn1Q8K445 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC15.71■□□□□ 0.11
Clrn1Q8K445 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Clrn1Q8K445 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Clrn1Q8K445 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Clrn1Q8K445 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Clrn1Q8K445 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Clrn1Q8K445 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Clrn1Q8K445 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Clrn1Q8K445 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC15.69■□□□□ 0.1
Clrn1Q8K445 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Clrn1Q8K445 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC15.68■□□□□ 0.1
Clrn1Q8K445 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Mir7071-201ENSMUST00000184847 69 ntBASIC15.68■□□□□ 0.1
Clrn1Q8K445 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Gm9987-201ENSMUST00000069768 567 ntBASIC15.68■□□□□ 0.1
Clrn1Q8K445 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Clrn1Q8K445 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Clrn1Q8K445 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Clrn1Q8K445 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Clrn1Q8K445 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC15.67■□□□□ 0.1
Clrn1Q8K445 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Clrn1Q8K445 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Clrn1Q8K445 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Clrn1Q8K445 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Clrn1Q8K445 Gm45203-201ENSMUST00000206384 1831 ntBASIC15.67■□□□□ 0.1
Clrn1Q8K445 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC15.67■□□□□ 0.1
Clrn1Q8K445 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Clrn1Q8K445 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Clrn1Q8K445 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC15.67■□□□□ 0.1
Clrn1Q8K445 Gm29994-201ENSMUST00000195495 1193 ntBASIC15.67■□□□□ 0.1
Clrn1Q8K445 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC15.67■□□□□ 0.1
Clrn1Q8K445 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms