Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Ccdc28aQ8CEI3 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ccdc28aQ8CEI3 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Ccdc28aQ8CEI3 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ccdc28aQ8CEI3 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Ccdc28aQ8CEI3 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Gm27000-201ENSMUST00000182943 842 ntBASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Ccdc28aQ8CEI3 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Nrn1-203ENSMUST00000223611 1443 ntBASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Ccdc28aQ8CEI3 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 AC124581.1-201ENSMUST00000225416 1399 ntBASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Ccdc28aQ8CEI3 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Gm9731-201ENSMUST00000209480 747 ntBASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Gm20049-201ENSMUST00000219950 730 ntBASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Ccdc28aQ8CEI3 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Ccdc28aQ8CEI3 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc28aQ8CEI3 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc28aQ8CEI3 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc28aQ8CEI3 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc28aQ8CEI3 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc28aQ8CEI3 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc28aQ8CEI3 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc28aQ8CEI3 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Ccdc28aQ8CEI3 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms