Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CtcfQ61164 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CtcfQ61164 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.32■□□□□ 0.52
CtcfQ61164 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.32■□□□□ 0.52
CtcfQ61164 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
CtcfQ61164 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.32■□□□□ 0.52
CtcfQ61164 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CtcfQ61164 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.31■□□□□ 0.52
CtcfQ61164 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CtcfQ61164 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CtcfQ61164 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CtcfQ61164 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.3■□□□□ 0.52
CtcfQ61164 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC18.3■□□□□ 0.52
CtcfQ61164 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CtcfQ61164 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.3■□□□□ 0.52
CtcfQ61164 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CtcfQ61164 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC18.3■□□□□ 0.52
CtcfQ61164 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CtcfQ61164 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CtcfQ61164 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CtcfQ61164 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CtcfQ61164 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CtcfQ61164 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CtcfQ61164 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CtcfQ61164 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CtcfQ61164 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CtcfQ61164 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CtcfQ61164 Gm12669-201ENSMUST00000122162 1009 ntBASIC18.29■□□□□ 0.52
CtcfQ61164 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.29■□□□□ 0.52
CtcfQ61164 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CtcfQ61164 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC18.29■□□□□ 0.52
CtcfQ61164 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CtcfQ61164 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CtcfQ61164 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CtcfQ61164 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CtcfQ61164 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CtcfQ61164 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CtcfQ61164 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CtcfQ61164 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CtcfQ61164 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CtcfQ61164 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CtcfQ61164 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CtcfQ61164 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CtcfQ61164 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.28■□□□□ 0.52
CtcfQ61164 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CtcfQ61164 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CtcfQ61164 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC18.28■□□□□ 0.52
CtcfQ61164 Gm15378-201ENSMUST00000121894 207 ntBASIC18.28■□□□□ 0.52
CtcfQ61164 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC18.28■□□□□ 0.52
CtcfQ61164 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.28■□□□□ 0.52
CtcfQ61164 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms