Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Gm3272-201ENSMUST00000181181 1229 ntBASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Gm7213-201ENSMUST00000215977 950 ntBASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Gm10566-201ENSMUST00000086739 996 ntBASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim58Q5NCC9 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim58Q5NCC9 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim58Q5NCC9 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Zfp264-201ENSMUST00000208656 1563 ntBASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 AC159205.6-201ENSMUST00000224935 887 ntBASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim58Q5NCC9 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Trim58Q5NCC9 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
Trim58Q5NCC9 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC21.01■□□□□ 0.95
Trim58Q5NCC9 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Trim58Q5NCC9 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Gm26917-202ENSMUST00000192833 3329 ntBASIC21■□□□□ 0.95
Trim58Q5NCC9 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Gm43799-201ENSMUST00000201845 579 ntBASIC21■□□□□ 0.95
Trim58Q5NCC9 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC21■□□□□ 0.95
Trim58Q5NCC9 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC21■□□□□ 0.95
Trim58Q5NCC9 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim58Q5NCC9 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms