Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ddb1Q3U1J4 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Gm5837-201ENSMUST00000191844 1369 ntBASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Gm8349-201ENSMUST00000182720 1003 ntBASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Mir8117-201ENSMUST00000184773 107 ntBASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ddb1Q3U1J4 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Gm4913-201ENSMUST00000117075 1290 ntBASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 H2af-ps-201ENSMUST00000119066 295 ntBASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Gm14057-201ENSMUST00000120631 482 ntBASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ddb1Q3U1J4 Tfap2a-209ENSMUST00000225180 1828 ntBASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Fcho2-208ENSMUST00000224992 2964 ntBASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Chchd1-203ENSMUST00000224633 557 ntBASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ddb1Q3U1J4 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Ddb1Q3U1J4 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Ddb1Q3U1J4 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddb1Q3U1J4 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddb1Q3U1J4 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddb1Q3U1J4 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddb1Q3U1J4 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddb1Q3U1J4 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC21.07■□□□□ 0.96
Ddb1Q3U1J4 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddb1Q3U1J4 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ddb1Q3U1J4 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
Ddb1Q3U1J4 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Gm9172-201ENSMUST00000212092 954 ntBASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 AC174742.1-201ENSMUST00000218272 304 ntBASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ddb1Q3U1J4 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC21.05■□□□□ 0.96
Ddb1Q3U1J4 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms