Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Gm18025-201ENSMUST00000221733 862 ntBASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Ptchd3Q0EEE2 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ptchd3Q0EEE2 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
Ptchd3Q0EEE2 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Ptchd3Q0EEE2 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ptchd3Q0EEE2 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ptchd3Q0EEE2 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ptchd3Q0EEE2 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Ptchd3Q0EEE2 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.08■□□□□ 0.17
Ptchd3Q0EEE2 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
Ptchd3Q0EEE2 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ptchd3Q0EEE2 Gm5643-201ENSMUST00000117081 966 ntBASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Gm11643-201ENSMUST00000119578 864 ntBASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ptchd3Q0EEE2 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Gm6576-201ENSMUST00000169678 883 ntBASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Gm20760-201ENSMUST00000179197 648 ntBASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Ptchd3Q0EEE2 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms