Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Nkx3-1P97436 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Gm7935-201ENSMUST00000100555 1278 ntBASIC14.34□□□□□ -0.11
Nkx3-1P97436 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Gm11452-201ENSMUST00000122376 690 ntBASIC14.34□□□□□ -0.11
Nkx3-1P97436 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Gm10052-201ENSMUST00000168019 960 ntBASIC14.34□□□□□ -0.11
Nkx3-1P97436 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Gm6443-201ENSMUST00000203599 874 ntBASIC14.34□□□□□ -0.11
Nkx3-1P97436 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Gm7729-201ENSMUST00000050143 801 ntBASIC14.34□□□□□ -0.11
Nkx3-1P97436 2610301B20Rik-201ENSMUST00000080517 2116 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Fcho2-208ENSMUST00000224992 2964 ntBASIC14.34□□□□□ -0.11
Nkx3-1P97436 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Nkx3-1P97436 Gm37194-201ENSMUST00000193092 3031 ntBASIC14.33□□□□□ -0.11
Nkx3-1P97436 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx3-1P97436 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Nkx3-1P97436 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Gm15372-201ENSMUST00000120729 834 ntBASIC14.33□□□□□ -0.12
Nkx3-1P97436 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC14.33□□□□□ -0.12
Nkx3-1P97436 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.33□□□□□ -0.12
Nkx3-1P97436 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Nkx3-1P97436 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC14.32□□□□□ -0.12
Nkx3-1P97436 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Gm43514-201ENSMUST00000198852 424 ntBASIC14.32□□□□□ -0.12
Nkx3-1P97436 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC14.32□□□□□ -0.12
Nkx3-1P97436 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.32□□□□□ -0.12
Nkx3-1P97436 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Nkx3-1P97436 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC14.31□□□□□ -0.12
Nkx3-1P97436 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx3-1P97436 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms