Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.59■□□□□ 0.41
Shmt1P50431 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Shmt1P50431 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Shmt1P50431 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
Shmt1P50431 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Shmt1P50431 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Shmt1P50431 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Shmt1P50431 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Shmt1P50431 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC17.58■□□□□ 0.4
Shmt1P50431 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.58■□□□□ 0.4
Shmt1P50431 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Shmt1P50431 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.58■□□□□ 0.4
Shmt1P50431 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.58■□□□□ 0.4
Shmt1P50431 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shmt1P50431 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Shmt1P50431 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Shmt1P50431 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.57■□□□□ 0.4
Shmt1P50431 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shmt1P50431 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Shmt1P50431 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
Shmt1P50431 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Shmt1P50431 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Shmt1P50431 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.56■□□□□ 0.4
Shmt1P50431 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.56■□□□□ 0.4
Shmt1P50431 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC17.56■□□□□ 0.4
Shmt1P50431 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Shmt1P50431 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.56■□□□□ 0.4
Shmt1P50431 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Shmt1P50431 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shmt1P50431 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Shmt1P50431 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Shmt1P50431 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.55■□□□□ 0.4
Shmt1P50431 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Shmt1P50431 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shmt1P50431 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.54■□□□□ 0.4
Shmt1P50431 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.54■□□□□ 0.4
Shmt1P50431 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shmt1P50431 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC17.54■□□□□ 0.4
Shmt1P50431 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Shmt1P50431 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms