Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Rfx1P48377 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Rfx1P48377 CT010444.2-201ENSMUST00000217877 1629 ntBASIC19.92■□□□□ 0.78
Rfx1P48377 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.92■□□□□ 0.78
Rfx1P48377 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
Rfx1P48377 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC19.92■□□□□ 0.78
Rfx1P48377 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Rfx1P48377 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Rfx1P48377 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Rfx1P48377 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
Rfx1P48377 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
Rfx1P48377 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Rfx1P48377 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC19.91■□□□□ 0.78
Rfx1P48377 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC19.91■□□□□ 0.78
Rfx1P48377 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.91■□□□□ 0.78
Rfx1P48377 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Rfx1P48377 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
Rfx1P48377 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC19.91■□□□□ 0.78
Rfx1P48377 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Rfx1P48377 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC19.91■□□□□ 0.78
Rfx1P48377 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC19.91■□□□□ 0.78
Rfx1P48377 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
Rfx1P48377 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Rfx1P48377 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Rfx1P48377 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC19.9■□□□□ 0.78
Rfx1P48377 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC19.9■□□□□ 0.78
Rfx1P48377 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 March8-201ENSMUST00000079012 4450 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 AC093043.3-201ENSMUST00000226531 2273 ntBASIC19.9■□□□□ 0.78
Rfx1P48377 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Rfx1P48377 Gm12382-201ENSMUST00000122005 922 ntBASIC19.9■□□□□ 0.78
Rfx1P48377 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC19.9■□□□□ 0.78
Rfx1P48377 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
Rfx1P48377 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
Rfx1P48377 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC19.9■□□□□ 0.78
Rfx1P48377 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Rfx1P48377 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Rfx1P48377 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Rfx1P48377 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Rfx1P48377 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC19.89■□□□□ 0.77
Rfx1P48377 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Gm9694-201ENSMUST00000193347 1189 ntBASIC19.89■□□□□ 0.77
Rfx1P48377 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC19.89■□□□□ 0.77
Rfx1P48377 AC107711.5-202ENSMUST00000226429 702 ntBASIC19.89■□□□□ 0.77
Rfx1P48377 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
Rfx1P48377 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Rfx1P48377 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Rfx1P48377 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Rfx1P48377 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms