Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col1a1P11087 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
Col1a1P11087 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC19.43■□□□□ 0.7
Col1a1P11087 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC19.43■□□□□ 0.7
Col1a1P11087 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.43■□□□□ 0.7
Col1a1P11087 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
Col1a1P11087 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col1a1P11087 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col1a1P11087 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col1a1P11087 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Col1a1P11087 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col1a1P11087 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC19.42■□□□□ 0.7
Col1a1P11087 AC107711.5-202ENSMUST00000226429 702 ntBASIC19.42■□□□□ 0.7
Col1a1P11087 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col1a1P11087 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col1a1P11087 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Col1a1P11087 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col1a1P11087 Fcho2-208ENSMUST00000224992 2964 ntBASIC19.42■□□□□ 0.7
Col1a1P11087 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col1a1P11087 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col1a1P11087 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col1a1P11087 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col1a1P11087 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col1a1P11087 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col1a1P11087 Gm25911-201ENSMUST00000157621 56 ntBASIC19.41■□□□□ 0.7
Col1a1P11087 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col1a1P11087 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC19.41■□□□□ 0.7
Col1a1P11087 Gm3928-201ENSMUST00000121141 1307 ntBASIC19.41■□□□□ 0.7
Col1a1P11087 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col1a1P11087 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col1a1P11087 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col1a1P11087 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC19.41■□□□□ 0.7
Col1a1P11087 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col1a1P11087 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC19.41■□□□□ 0.7
Col1a1P11087 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col1a1P11087 Gm25406-201ENSMUST00000157599 105 ntBASIC19.41■□□□□ 0.7
Col1a1P11087 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col1a1P11087 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col1a1P11087 AC122901.1-201ENSMUST00000214203 1790 ntBASIC19.4■□□□□ 0.7
Col1a1P11087 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Col1a1P11087 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.4■□□□□ 0.7
Col1a1P11087 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col1a1P11087 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC19.4■□□□□ 0.7
Col1a1P11087 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col1a1P11087 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col1a1P11087 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col1a1P11087 Gm8969-201ENSMUST00000199694 526 ntBASIC19.4■□□□□ 0.7
Col1a1P11087 AC090659.1-201ENSMUST00000224334 768 ntBASIC19.4■□□□□ 0.7
Col1a1P11087 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col1a1P11087 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col1a1P11087 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col1a1P11087 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col1a1P11087 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Col1a1P11087 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col1a1P11087 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Col1a1P11087 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col1a1P11087 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col1a1P11087 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC19.39■□□□□ 0.69
Col1a1P11087 Gm7063-201ENSMUST00000186840 981 ntBASIC19.39■□□□□ 0.69
Col1a1P11087 Gm8655-201ENSMUST00000221159 852 ntBASIC19.39■□□□□ 0.69
Col1a1P11087 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col1a1P11087 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col1a1P11087 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col1a1P11087 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col1a1P11087 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col1a1P11087 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col1a1P11087 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Col1a1P11087 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.39■□□□□ 0.69
Col1a1P11087 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col1a1P11087 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Col1a1P11087 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col1a1P11087 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
Col1a1P11087 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC19.38■□□□□ 0.69
Col1a1P11087 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC19.38■□□□□ 0.69
Col1a1P11087 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col1a1P11087 Gm16499-203ENSMUST00000204633 2177 ntBASIC19.38■□□□□ 0.69
Col1a1P11087 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Col1a1P11087 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col1a1P11087 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col1a1P11087 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col1a1P11087 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Col1a1P11087 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Col1a1P11087 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col1a1P11087 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col1a1P11087 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC19.37■□□□□ 0.69
Col1a1P11087 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col1a1P11087 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Col1a1P11087 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Col1a1P11087 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Col1a1P11087 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms