Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MIR188-201ENST00000385034 86 ntBASIC5.88□□□□□ -1.47
RNF4P78317 OR7E101P-201ENST00000400428 513 ntBASIC5.88□□□□□ -1.47
RNF4P78317 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 AL512422.1-201ENST00000407033 553 ntBASIC5.88□□□□□ -1.47
RNF4P78317 AL139805.1-201ENST00000407837 289 ntBASIC5.88□□□□□ -1.47
RNF4P78317 RNU4-55P-201ENST00000410731 137 ntBASIC5.88□□□□□ -1.47
RNF4P78317 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 BX295541.1-201ENST00000417774 250 ntBASIC5.88□□□□□ -1.47
RNF4P78317 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 RGS5-217ENST00000451759 835 ntTSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 FABP3P2-201ENST00000453169 399 ntBASIC5.88□□□□□ -1.47
RNF4P78317 SNX18P26-201ENST00000458433 740 ntBASIC5.88□□□□□ -1.47
RNF4P78317 AC017015.1-201ENST00000477387 286 ntBASIC5.88□□□□□ -1.47
RNF4P78317 AC013828.1-201ENST00000481845 158 ntBASIC5.88□□□□□ -1.47
RNF4P78317 RN7SL741P-201ENST00000482473 289 ntBASIC5.88□□□□□ -1.47
RNF4P78317 OR9A1P-202ENST00000484361 945 ntBASIC5.88□□□□□ -1.47
RNF4P78317 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 AC112484.3-201ENST00000505910 329 ntBASIC5.88□□□□□ -1.47
RNF4P78317 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 AC109481.1-201ENST00000509173 282 ntBASIC5.88□□□□□ -1.47
RNF4P78317 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC5.88□□□□□ -1.47
RNF4P78317 KCTD9P2-201ENST00000512203 1013 ntBASIC5.88□□□□□ -1.47
RNF4P78317 RNA5SP441-201ENST00000516809 88 ntBASIC5.88□□□□□ -1.47
RNF4P78317 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC5.88□□□□□ -1.47
RNF4P78317 AC022878.1-201ENST00000530684 149 ntBASIC5.88□□□□□ -1.47
RNF4P78317 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 GLYCAM1-201ENST00000546596 285 ntBASIC5.88□□□□□ -1.47
RNF4P78317 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.88□□□□□ -1.47
RNF4P78317 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 AL078601.3-201ENST00000573303 535 ntBASIC5.88□□□□□ -1.47
RNF4P78317 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC5.88□□□□□ -1.47
RNF4P78317 MIR4420-201ENST00000583944 77 ntBASIC5.88□□□□□ -1.47
RNF4P78317 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC5.88□□□□□ -1.47
RNF4P78317 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 AL049634.3-201ENST00000604968 457 ntBASIC5.88□□□□□ -1.47
RNF4P78317 AC008536.2-201ENST00000607284 349 ntBASIC5.88□□□□□ -1.47
RNF4P78317 AC097468.3-201ENST00000607956 456 ntBASIC5.88□□□□□ -1.47
RNF4P78317 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 AC110994.2-201ENST00000635481 492 ntBASIC5.88□□□□□ -1.47
RNF4P78317 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
RNF4P78317 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.88□□□□□ -1.47
RNF4P78317 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
RNF4P78317 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 AL133243.2-201ENST00000610331 1621 ntBASIC5.88□□□□□ -1.47
RNF4P78317 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.88□□□□□ -1.47
RNF4P78317 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
RNF4P78317 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC5.88□□□□□ -1.47
RNF4P78317 TMCC1P1-201ENST00000518897 1980 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC020633.1-201ENST00000468439 2247 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.87□□□□□ -1.47
RNF4P78317 OR5A2-202ENST00000641361 6655 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
RNF4P78317 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.87□□□□□ -1.47
RNF4P78317 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
RNF4P78317 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC5.87□□□□□ -1.47
RNF4P78317 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
RNF4P78317 CBX3P1-201ENST00000325243 554 ntBASIC5.87□□□□□ -1.47
RNF4P78317 RNA5SP232-201ENST00000364144 119 ntBASIC5.87□□□□□ -1.47
RNF4P78317 RNU6-777P-201ENST00000364265 104 ntBASIC5.87□□□□□ -1.47
RNF4P78317 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
RNF4P78317 NFIB-202ENST00000380924 840 ntTSL 5 BASIC5.87□□□□□ -1.47
RNF4P78317 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.87□□□□□ -1.47
RNF4P78317 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC5.87□□□□□ -1.47
RNF4P78317 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC5.87□□□□□ -1.47
RNF4P78317 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.87□□□□□ -1.47
RNF4P78317 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.87□□□□□ -1.47
RNF4P78317 AC094019.1-201ENST00000434678 472 ntBASIC5.87□□□□□ -1.47
RNF4P78317 CBX1P4-201ENST00000439415 457 ntBASIC5.87□□□□□ -1.47
RNF4P78317 CYCSP51-201ENST00000443545 318 ntBASIC5.87□□□□□ -1.47
RNF4P78317 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC5.87□□□□□ -1.47
RNF4P78317 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC5.87□□□□□ -1.47
RNF4P78317 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.87□□□□□ -1.47
RNF4P78317 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.87□□□□□ -1.47
RNF4P78317 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.87□□□□□ -1.47
RNF4P78317 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.87□□□□□ -1.47
RNF4P78317 AC097493.1-201ENST00000463958 372 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms