Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CASC19-204ENST00000641001 2055 ntBASIC6.95□□□□□ -1.3
CUX1P39880 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC6.95□□□□□ -1.3
CUX1P39880 AL078604.1-201ENST00000404609 466 ntBASIC6.95□□□□□ -1.3
CUX1P39880 RN7SKP156-201ENST00000410308 342 ntBASIC6.95□□□□□ -1.3
CUX1P39880 AC008280.1-201ENST00000418851 412 ntBASIC6.95□□□□□ -1.3
CUX1P39880 EIF4A1P1-201ENST00000420241 934 ntBASIC6.95□□□□□ -1.3
CUX1P39880 DNAJA1P1-201ENST00000425106 1187 ntBASIC6.95□□□□□ -1.3
CUX1P39880 AC008966.2-201ENST00000606157 453 ntBASIC6.95□□□□□ -1.3
CUX1P39880 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CUX1P39880 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.95□□□□□ -1.3
CUX1P39880 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
CUX1P39880 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC6.94□□□□□ -1.3
CUX1P39880 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CUX1P39880 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
CUX1P39880 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
CUX1P39880 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
CUX1P39880 NPM1P34-201ENST00000428821 893 ntBASIC6.94□□□□□ -1.3
CUX1P39880 AL358472.1-201ENST00000431295 329 ntBASIC6.94□□□□□ -1.3
CUX1P39880 RPS20P21-201ENST00000466859 343 ntBASIC6.94□□□□□ -1.3
CUX1P39880 AP000619.3-201ENST00000535634 1127 ntBASIC6.94□□□□□ -1.3
CUX1P39880 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC6.94□□□□□ -1.3
CUX1P39880 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC6.94□□□□□ -1.3
CUX1P39880 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC6.94□□□□□ -1.3
CUX1P39880 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC6.94□□□□□ -1.3
CUX1P39880 AC010503.3-201ENST00000594355 540 ntBASIC6.94□□□□□ -1.3
CUX1P39880 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CUX1P39880 FAP-203ENST00000443424 2598 ntTSL 2 BASIC6.94□□□□□ -1.3
CUX1P39880 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CUX1P39880 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
CUX1P39880 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
CUX1P39880 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
CUX1P39880 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC6.94□□□□□ -1.3
CUX1P39880 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC6.93□□□□□ -1.3
CUX1P39880 AP001002.1-201ENST00000625148 1513 ntBASIC6.93□□□□□ -1.3
CUX1P39880 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC6.93□□□□□ -1.3
CUX1P39880 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
CUX1P39880 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC6.93□□□□□ -1.3
CUX1P39880 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC6.93□□□□□ -1.3
CUX1P39880 OR4F13P-201ENST00000428478 931 ntBASIC6.93□□□□□ -1.3
CUX1P39880 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC6.93□□□□□ -1.3
CUX1P39880 SCARNA14-201ENST00000516903 136 ntBASIC6.93□□□□□ -1.3
CUX1P39880 NAT2-202ENST00000520116 716 ntTSL 3 BASIC6.93□□□□□ -1.3
CUX1P39880 AC138832.1-201ENST00000522871 556 ntBASIC6.93□□□□□ -1.3
CUX1P39880 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC6.93□□□□□ -1.3
CUX1P39880 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC6.93□□□□□ -1.3
CUX1P39880 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC6.93□□□□□ -1.3
CUX1P39880 AC015967.1-201ENST00000619893 476 ntBASIC6.93□□□□□ -1.3
CUX1P39880 ERCC6-202ENST00000374127 1782 ntBASIC6.93□□□□□ -1.3
CUX1P39880 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
CUX1P39880 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.93□□□□□ -1.3
CUX1P39880 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC6.93□□□□□ -1.3
CUX1P39880 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.93□□□□□ -1.3
CUX1P39880 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC6.93□□□□□ -1.3
CUX1P39880 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC6.93□□□□□ -1.3
CUX1P39880 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
CUX1P39880 AC007066.1-201ENST00000392902 381 ntBASIC6.92□□□□□ -1.3
CUX1P39880 SYF2P2-201ENST00000417620 583 ntBASIC6.92□□□□□ -1.3
CUX1P39880 MTCO1P54-201ENST00000430139 712 ntBASIC6.92□□□□□ -1.3
CUX1P39880 AC006499.5-201ENST00000505037 514 ntBASIC6.92□□□□□ -1.3
CUX1P39880 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC6.92□□□□□ -1.3
CUX1P39880 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CUX1P39880 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC6.92□□□□□ -1.3
CUX1P39880 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
CUX1P39880 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC6.92□□□□□ -1.3
CUX1P39880 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CUX1P39880 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
CUX1P39880 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.92□□□□□ -1.3
CUX1P39880 PAPPA-AS1-201ENST00000445861 2450 ntBASIC6.92□□□□□ -1.3
CUX1P39880 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CUX1P39880 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC6.91□□□□□ -1.3
CUX1P39880 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.91□□□□□ -1.3
CUX1P39880 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC6.91□□□□□ -1.3
CUX1P39880 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC6.91□□□□□ -1.3
CUX1P39880 RPL7P1-201ENST00000468161 747 ntBASIC6.91□□□□□ -1.3
CUX1P39880 RPL7P9-201ENST00000468715 747 ntBASIC6.91□□□□□ -1.3
CUX1P39880 DEFB109A-201ENST00000482450 265 ntBASIC6.91□□□□□ -1.3
CUX1P39880 SNORA74D-201ENST00000516404 141 ntBASIC6.91□□□□□ -1.3
CUX1P39880 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC6.91□□□□□ -1.3
CUX1P39880 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC6.91□□□□□ -1.3
CUX1P39880 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC6.91□□□□□ -1.3
CUX1P39880 MIR8069-1-201ENST00000616627 86 ntBASIC6.91□□□□□ -1.3
CUX1P39880 MIR8069-2-201ENST00000621412 86 ntBASIC6.91□□□□□ -1.3
CUX1P39880 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC6.91□□□□□ -1.3
CUX1P39880 HSPD1P14-201ENST00000432666 1618 ntBASIC6.91□□□□□ -1.3
CUX1P39880 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
CUX1P39880 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC6.91□□□□□ -1.3
CUX1P39880 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
CUX1P39880 AC097461.1-201ENST00000568928 2821 ntBASIC6.91□□□□□ -1.3
CUX1P39880 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC6.91□□□□□ -1.3
CUX1P39880 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
CUX1P39880 AC114814.2-201ENST00000419195 485 ntBASIC6.91□□□□□ -1.3
CUX1P39880 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC6.91□□□□□ -1.3
CUX1P39880 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC6.91□□□□□ -1.3
CUX1P39880 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC6.91□□□□□ -1.3
CUX1P39880 OR9M1P-201ENST00000459641 921 ntBASIC6.91□□□□□ -1.3
CUX1P39880 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC6.91□□□□□ -1.3
CUX1P39880 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC6.91□□□□□ -1.3
CUX1P39880 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC6.9□□□□□ -1.31
CUX1P39880 AP000907.1-201ENST00000428428 510 ntBASIC6.9□□□□□ -1.31
CUX1P39880 RPL7P15-201ENST00000461190 712 ntBASIC6.9□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms