Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL049830.4-201ENST00000555149 351 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AL109741.3-201ENST00000561748 592 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC116553.2-201ENST00000564203 463 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AL137072.1-201ENST00000603444 466 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC022960.3-201ENST00000619794 441 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 AC145207.9-201ENST00000623802 325 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 AP003476.1-201ENST00000623984 516 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 SCN1A-220ENST00000641603 12506 ntBASIC4.3□□□□□ -1.72
NKX3-1Q99801 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NKX3-1Q99801 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.3□□□□□ -1.72
NKX3-1Q99801 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 BTBD10P1-201ENST00000549824 1352 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 Z95327.2-201ENST00000414579 1873 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 RNU6-207P-201ENST00000384137 107 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 RNU6-452P-201ENST00000384406 107 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 OR6K4P-201ENST00000423179 955 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 RGS17P1-201ENST00000423358 553 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC108075.1-201ENST00000424692 529 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC092447.2-201ENST00000435487 669 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 PTMAP6-201ENST00000439110 327 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AL645638.1-201ENST00000440519 361 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 CNOT7P2-201ENST00000441051 832 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC044797.1-201ENST00000445744 679 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AL591623.2-201ENST00000449978 222 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 RHEBP2-201ENST00000450289 600 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 TVP23BP2-201ENST00000455082 615 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC005532.2-201ENST00000467154 373 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 RPSAP50-201ENST00000481955 852 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 RPL32P9-201ENST00000487963 407 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC093890.1-201ENST00000502554 540 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 ZKSCAN7P1-201ENST00000543668 673 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 YWHAZP1-201ENST00000556286 722 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC087477.6-201ENST00000559595 843 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 MIR3691-201ENST00000578066 90 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 RN7SL435P-201ENST00000584418 282 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC096947.1-201ENST00000603233 470 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AL121652.1-201ENST00000608851 448 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC016769.4-201ENST00000616893 535 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AL512427.1-201ENST00000618593 349 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AP003485.1-201ENST00000625093 753 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC126544.2-201ENST00000625174 749 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.29□□□□□ -1.72
NKX3-1Q99801 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
NKX3-1Q99801 AC000123.3-201ENST00000624029 4975 ntBASIC4.29□□□□□ -1.72
NKX3-1Q99801 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 A2MP1-204ENST00000566278 4130 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NKX3-1Q99801 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4.28□□□□□ -1.72
NKX3-1Q99801 RNU6-468P-201ENST00000384003 109 ntBASIC4.28□□□□□ -1.72
NKX3-1Q99801 RNU6-185P-201ENST00000384421 107 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 186.4 ms