Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC135068.5-201ENST00000624197 983 ntBASIC5.47□□□□□ -1.53
MSX2P35548 AC127502.3-201ENST00000636170 1206 ntBASIC5.47□□□□□ -1.53
MSX2P35548 AF001550.2-201ENST00000636643 217 ntBASIC5.47□□□□□ -1.53
MSX2P35548 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.47□□□□□ -1.53
MSX2P35548 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
MSX2P35548 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSX2P35548 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSX2P35548 AC002525.1-201ENST00000624392 1622 ntBASIC5.47□□□□□ -1.53
MSX2P35548 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX2P35548 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
MSX2P35548 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSX2P35548 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
MSX2P35548 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.47□□□□□ -1.53
MSX2P35548 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
MSX2P35548 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSX2P35548 DDX47-201ENST00000352940 1698 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
MSX2P35548 AC007842.1-201ENST00000597336 2039 ntBASIC5.47□□□□□ -1.53
MSX2P35548 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
MSX2P35548 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
MSX2P35548 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 AC092447.7-201ENST00000422212 1621 ntBASIC5.46□□□□□ -1.54
MSX2P35548 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 SNORA21-201ENST00000362423 132 ntBASIC5.46□□□□□ -1.54
MSX2P35548 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
MSX2P35548 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 RNA5SP187-201ENST00000384400 119 ntBASIC5.46□□□□□ -1.54
MSX2P35548 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
MSX2P35548 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 HMGB3P7-201ENST00000400214 611 ntBASIC5.46□□□□□ -1.54
MSX2P35548 RNA5SP80-201ENST00000410475 111 ntBASIC5.46□□□□□ -1.54
MSX2P35548 NRBF2P2-201ENST00000413087 861 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 RNGTTP1-201ENST00000420965 728 ntBASIC5.46□□□□□ -1.54
MSX2P35548 OR6K4P-201ENST00000423179 955 ntBASIC5.46□□□□□ -1.54
MSX2P35548 OR10T1P-201ENST00000424327 947 ntBASIC5.46□□□□□ -1.54
MSX2P35548 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 USP9YP31-201ENST00000431405 881 ntBASIC5.46□□□□□ -1.54
MSX2P35548 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 AL445928.1-201ENST00000435545 222 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AC002542.1-201ENST00000440683 193 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AL445623.1-201ENST00000440888 237 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 AL512326.1-201ENST00000443050 721 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AL137845.2-201ENST00000444292 988 ntBASIC5.46□□□□□ -1.54
MSX2P35548 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC5.46□□□□□ -1.54
MSX2P35548 RHEBP2-201ENST00000450289 600 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AC093392.2-201ENST00000450682 337 ntBASIC5.46□□□□□ -1.54
MSX2P35548 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
MSX2P35548 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 MTCO3P38-201ENST00000468910 766 ntBASIC5.46□□□□□ -1.54
MSX2P35548 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC5.46□□□□□ -1.54
MSX2P35548 RPS7P6-201ENST00000485777 579 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.46□□□□□ -1.54
MSX2P35548 AC105384.2-201ENST00000508433 640 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 AC138517.1-201ENST00000515724 568 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 AC023632.1-201ENST00000518463 375 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC5.46□□□□□ -1.54
MSX2P35548 AC027026.1-201ENST00000532323 742 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AC036111.2-201ENST00000533247 901 ntBASIC5.46□□□□□ -1.54
MSX2P35548 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC5.46□□□□□ -1.54
MSX2P35548 AC092747.2-201ENST00000545069 983 ntBASIC5.46□□□□□ -1.54
MSX2P35548 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.46□□□□□ -1.54
MSX2P35548 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC5.46□□□□□ -1.54
MSX2P35548 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 CT45A1-202ENST00000594565 1007 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC5.46□□□□□ -1.54
MSX2P35548 AC103881.1-201ENST00000603476 538 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 AC015819.1-201ENST00000613588 663 ntBASIC5.46□□□□□ -1.54
MSX2P35548 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC5.46□□□□□ -1.54
MSX2P35548 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 AC095031.1-201ENST00000623685 672 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AC024023.1-201ENST00000624530 922 ntBASIC5.46□□□□□ -1.54
MSX2P35548 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.46□□□□□ -1.54
MSX2P35548 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.46□□□□□ -1.54
MSX2P35548 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 CR848007.1-201ENST00000442354 1699 ntBASIC5.46□□□□□ -1.54
MSX2P35548 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.46□□□□□ -1.54
MSX2P35548 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
MSX2P35548 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms