Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AL450345.1-202ENST00000605741 3881 ntBASIC5.89□□□□□ -1.47
HLA-DOAP06340 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HLA-DOAP06340 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HLA-DOAP06340 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC5.89□□□□□ -1.47
HLA-DOAP06340 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HLA-DOAP06340 CR382285.2-201ENST00000624662 1495 ntBASIC5.89□□□□□ -1.47
HLA-DOAP06340 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.89□□□□□ -1.47
HLA-DOAP06340 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.89□□□□□ -1.47
HLA-DOAP06340 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 RNU6-252P-201ENST00000363232 107 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 SNORA56-201ENST00000383966 129 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 RNU2-50P-201ENST00000410494 143 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC245028.1-201ENST00000423259 256 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 AL589823.1-201ENST00000429577 183 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 TRAPPC13P1-201ENST00000435991 1062 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 ZNF886P-201ENST00000450781 723 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 RN7SL738P-201ENST00000470264 297 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC133963.2-201ENST00000513686 578 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 RFESD-208ENST00000513950 464 ntTSL 5 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 Y_RNA.655-201ENST00000515919 96 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 BUD31P1-201ENST00000521828 359 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC104229.1-201ENST00000561364 255 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 RN7SL52P-201ENST00000584271 284 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 Z99497.2-201ENST00000603634 310 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 Z82195.1-201ENST00000604558 398 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC080013.3-201ENST00000606839 578 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 MIR6798-201ENST00000612887 67 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 RN7SL722P-201ENST00000617780 284 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 RN7SL565P-201ENST00000618246 284 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 AP000676.3-201ENST00000623299 569 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC104985.3-201ENST00000623479 597 ntBASIC5.88□□□□□ -1.47
HLA-DOAP06340 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC5.88□□□□□ -1.47
HLA-DOAP06340 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HLA-DOAP06340 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DOAP06340 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DOAP06340 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DOAP06340 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DOAP06340 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DOAP06340 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DOAP06340 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DOAP06340 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DOAP06340 RNA5SP191-201ENST00000362585 102 ntBASIC5.87□□□□□ -1.47
HLA-DOAP06340 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DOAP06340 AC119751.3-201ENST00000399720 670 ntBASIC5.87□□□□□ -1.47
HLA-DOAP06340 RPL10P10-201ENST00000403509 664 ntBASIC5.87□□□□□ -1.47
HLA-DOAP06340 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 DEFB130D-201ENST00000426866 237 ntBASIC5.87□□□□□ -1.47
HLA-DOAP06340 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 AL138878.2-201ENST00000440581 1241 ntBASIC5.87□□□□□ -1.47
HLA-DOAP06340 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 ART2BP-201ENST00000453501 499 ntBASIC5.87□□□□□ -1.47
HLA-DOAP06340 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 AC006967.1-201ENST00000467608 589 ntBASIC5.87□□□□□ -1.47
HLA-DOAP06340 AC006463.2-201ENST00000473326 348 ntBASIC5.87□□□□□ -1.47
HLA-DOAP06340 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
HLA-DOAP06340 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.87□□□□□ -1.47
HLA-DOAP06340 IGKV1-32-201ENST00000519290 311 ntBASIC5.87□□□□□ -1.47
HLA-DOAP06340 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms