Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 IGKV7-3-201ENST00000357453 298 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 SNORA73.1-201ENST00000363107 205 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC019155.1-201ENST00000382242 574 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AL357515.1-201ENST00000402967 542 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC114755.2-201ENST00000413520 361 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 RPL12P28-201ENST00000430852 489 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 TMX2P1-201ENST00000436507 708 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC239367.2-201ENST00000447309 705 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC091153.1-201ENST00000466297 402 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 UBA52P3-201ENST00000491303 382 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC023424.1-201ENST00000496058 459 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 RNU6-751P-201ENST00000516382 101 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 LSM3P2-201ENST00000551246 273 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 SETP1-201ENST00000556014 845 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 BNIP3P5-201ENST00000562290 498 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 MTATP6P25-201ENST00000574491 261 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC090312.1-201ENST00000580637 348 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC245128.3-201ENST00000594721 748 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC090953.1-201ENST00000604305 1092 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AL008729.2-201ENST00000606393 473 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 FAM27B-201ENST00000610601 213 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AC011755.1-201ENST00000623763 2049 ntBASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.9□□□□□ -1.63
HDDC3Q8N4P3 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 RN7SKP106-201ENST00000410832 272 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC005154.2-201ENST00000438110 379 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 TCEA1P3-201ENST00000443005 880 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 ARL2BPP10-201ENST00000446487 531 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC000111.2-201ENST00000448200 210 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC005229.2-201ENST00000456995 399 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 RPS4XP12-201ENST00000461747 709 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 ENPP7P11-201ENST00000505915 627 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC093770.1-201ENST00000511559 571 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 RN7SKP122-201ENST00000515923 296 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 RNU6-760P-201ENST00000516078 97 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 MIR4715-201ENST00000584117 79 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC068790.7-201ENST00000602347 528 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AL133247.2-201ENST00000603236 482 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AL590392.1-201ENST00000604960 446 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC010424.2-201ENST00000607594 443 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 MIR6853-201ENST00000619642 74 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AL445437.1-201ENST00000623157 3087 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 AC093591.2-201ENST00000565254 3843 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms