Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AP000889.1-201ENST00000530968 660 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 LSM3P2-201ENST00000551246 273 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AC015967.1-201ENST00000619893 476 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AL022393.1-201ENST00000625142 1677 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 RNU1-132P-201ENST00000364300 164 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AC062016.2-201ENST00000420950 676 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 OR2AH1P-201ENST00000425717 928 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 NMNAT1P2-201ENST00000435192 860 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AC114495.1-201ENST00000441274 436 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 RPS3AP12-201ENST00000443616 753 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 RPL7P15-201ENST00000461190 712 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 ADAD1P2-201ENST00000588476 646 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 PCA3_2.1-201ENST00000612507 409 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 AC234782.5-201ENST00000617723 324 ntBASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC88AQ3V6T2 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 MIR1271-201ENST00000408537 86 ntBASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 MIR8059-201ENST00000620427 81 ntBASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC88AQ3V6T2 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 RPS20P14-201ENST00000412545 360 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AC104164.2-201ENST00000496953 495 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 RPS27AP13-201ENST00000498403 237 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 HMGB3P16-201ENST00000508037 287 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AC120057.2-201ENST00000571520 271 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AC005034.4-201ENST00000603612 899 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 IMMP1LP1-201ENST00000605170 488 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AC243756.2-201ENST00000618406 463 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AC063952.1-203ENST00000634410 658 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 RNA5SP151-201ENST00000365632 117 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AC068533.1-201ENST00000418542 415 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 VN1R105P-201ENST00000486595 910 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 RNU6-513P-201ENST00000516104 104 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AP000619.3-201ENST00000535634 1127 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 AC005899.7-201ENST00000618199 588 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 MIR3653-201ENST00000625572 110 ntBASIC5.37□□□□□ -1.55
CCDC88AQ3V6T2 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC88AQ3V6T2 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms