Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ATP5F1P2-201ENST00000398143 760 ntBASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 AL589647.1-201ENST00000402485 466 ntBASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 BX284632.1-201ENST00000478218 541 ntBASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 AC011037.1-201ENST00000483964 558 ntBASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 DYNLL1P4-201ENST00000549314 266 ntBASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 OR11J2P-201ENST00000555298 907 ntBASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 AC027455.1-201ENST00000574104 594 ntBASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 MTCYBP13-201ENST00000578634 1093 ntBASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 KATNBL1P5-201ENST00000605015 517 ntBASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 MIR1264-201ENST00000616374 69 ntBASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CHMP4AQ9BY43 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 MTND5P11-201ENST00000511037 1812 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 AC131971.1-201ENST00000332881 1482 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 SLC2A3P1-201ENST00000519666 1451 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 RNU6-98P-201ENST00000384173 107 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 SNORA66-201ENST00000384792 133 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 HNRNPDP2-201ENST00000406475 478 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 IPMKP1-201ENST00000425988 855 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 OR5AW1P-201ENST00000426334 1006 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 TRIM60P3Y-201ENST00000432201 673 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 NPM1P33-201ENST00000438918 872 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 TPTE2P6-202ENST00000445572 1007 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 AC091180.1-201ENST00000462104 372 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 RPL32P9-201ENST00000487963 407 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 AC092709.1-201ENST00000521355 1045 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 CIR1P1-201ENST00000524055 1133 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 NDUFB4P11-201ENST00000560510 395 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 AC090751.1-201ENST00000566966 267 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 AL021707.7-201ENST00000607991 416 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 AL118556.2-201ENST00000614375 824 ntBASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 BBX-203ENST00000402543 3980 ntTSL 5 BASIC6.55□□□□□ -1.36
CHMP4AQ9BY43 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 PNPT1P2-201ENST00000456768 2050 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AL356057.1-202ENST00000402263 756 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AP002530.1-201ENST00000405705 684 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 RN7SKP125-201ENST00000410481 302 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC006455.6-201ENST00000426192 893 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 ELOCP11-201ENST00000436690 332 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 ELOCP16-201ENST00000444494 332 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC069540.1-201ENST00000446320 988 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 RNU6ATAC24P-201ENST00000516811 135 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC093014.1-201ENST00000548926 724 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 OR4H6P-202ENST00000603819 340 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC091932.2-201ENST00000623014 291 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC112694.2-201ENST00000623697 768 ntBASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms