Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC093249.4-201ENST00000564755 259 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 MIR4512-201ENST00000583257 77 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC006116.3-201ENST00000592968 361 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 AL049844.2-201ENST00000604280 628 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC100847.1-201ENST00000611316 481 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC000123.2-201ENST00000623124 461 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 CR381572.2-201ENST00000624852 397 ntBASIC4.8□□□□□ -1.64
VPS39Q96JC1 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS39Q96JC1 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS39Q96JC1 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS39Q96JC1 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.8□□□□□ -1.64
VPS39Q96JC1 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS39Q96JC1 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS39Q96JC1 RNU1-106P-201ENST00000384382 164 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 AL356806.1-201ENST00000422524 916 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 RPS27P18-201ENST00000431701 247 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 RPS17P8-201ENST00000434525 335 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 RPL7P11-201ENST00000437586 658 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 AC023512.1-201ENST00000444513 499 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 SLC25A18P1-201ENST00000449385 454 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 RPL23AP56-201ENST00000460778 453 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 AC010683.1-201ENST00000473673 378 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 AC109462.1-201ENST00000491087 368 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 AC140172.1-201ENST00000502928 141 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 FKBP1BP1-201ENST00000553366 325 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 AL096803.3-201ENST00000609032 532 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 AC011472.4-201ENST00000615848 491 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 AL023881.1-201ENST00000621088 301 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 AC007342.8-201ENST00000623278 678 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 AC011815.3-201ENST00000624194 473 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS39Q96JC1 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS39Q96JC1 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 RARSP1-201ENST00000542842 1418 ntBASIC4.79□□□□□ -1.64
VPS39Q96JC1 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS39Q96JC1 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS39Q96JC1 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AL672167.1-203ENST00000641299 2975 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS39Q96JC1 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 RNU4-34P-201ENST00000410431 124 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 RN7SKP273-201ENST00000411392 314 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 LINC00993-201ENST00000420453 540 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC012519.1-201ENST00000424588 610 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 IPMKP1-201ENST00000425988 855 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 MYO5BP2-201ENST00000449815 1277 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 RPL7P31-201ENST00000450192 724 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC026348.1-201ENST00000462549 1053 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC005532.2-201ENST00000467154 373 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC074386.1-201ENST00000476560 767 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 RN7SL727P-201ENST00000482164 296 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 RNU6-751P-201ENST00000516382 101 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC104997.1-201ENST00000519761 717 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC079075.1-201ENST00000559543 878 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC243654.2-201ENST00000612843 443 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 LINC00901.1-201ENST00000617252 152 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC234782.5-201ENST00000617723 324 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 CFTRP2-201ENST00000634304 199 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 OR5AC4P-202ENST00000642086 985 ntBASIC4.78□□□□□ -1.64
VPS39Q96JC1 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms