Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC021146.4-201ENST00000309229 279 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 RNU6-249P-201ENST00000363016 102 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 SNORA27.3-201ENST00000364937 134 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 Z99127.2-201ENST00000441426 334 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 SCARNA10-201ENST00000459255 330 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC015912.2-201ENST00000571053 181 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC234771.5-201ENST00000600161 514 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC130352.1-201ENST00000602979 661 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC104785.1-201ENST00000603220 588 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC233280.2-201ENST00000603917 1070 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC097505.1-201ENST00000610199 565 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 MIR8069-1-201ENST00000616627 86 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC074276.2-201ENST00000619891 348 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 MIR8069-2-201ENST00000621412 86 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AP000346.3-201ENST00000622821 210 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 DHX40P1-201ENST00000588725 1412 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AL391684.1-202ENST00000641293 1636 ntBASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
C9orf40Q8IXQ3 AC108467.2-201ENST00000617640 1597 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 OR51H2P-202ENST00000641424 3046 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 OR14L1P-202ENST00000641545 3009 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 OR4K15-201ENST00000305051 1216 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 RNU1-83P-201ENST00000363426 164 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 RNU6-883P-201ENST00000384597 107 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 MIR137-201ENST00000385223 102 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 RNA5SP332-201ENST00000391063 115 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 RNU2-22P-201ENST00000411266 212 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 CYCSP10-201ENST00000417973 294 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 CR848007.2-201ENST00000424918 787 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 YWHAZP2-201ENST00000440317 728 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 CYCSP34-201ENST00000458172 304 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AC089999.1-201ENST00000460336 374 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AC112206.1-201ENST00000468416 477 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 RN7SL738P-201ENST00000470264 297 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 OR52A4P-201ENST00000472867 958 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 RN7SL205P-201ENST00000490174 284 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 TCP11X3P-202ENST00000514289 1254 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 RNA5SP228-201ENST00000516232 133 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AP001781.1-201ENST00000530977 207 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AC022882.1-201ENST00000532142 501 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AL008729.2-201ENST00000606393 473 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 AL353600.1-201ENST00000608148 251 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 RN7SL722P-201ENST00000617780 284 ntBASIC4.27□□□□□ -1.73
C9orf40Q8IXQ3 RN7SL565P-201ENST00000618246 284 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms