Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.52□□□□□ -1.69
LMX1BO60663 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LMX1BO60663 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.51□□□□□ -1.69
LMX1BO60663 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 AL355578.1-201ENST00000607405 1328 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 PROS2P-201ENST00000474651 1951 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LMX1BO60663 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
LMX1BO60663 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
LMX1BO60663 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 AC015813.6-201ENST00000624409 5808 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
LMX1BO60663 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
LMX1BO60663 U3.2-201ENST00000362981 210 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 RNU6-1005P-201ENST00000384519 107 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
LMX1BO60663 AL035419.1-201ENST00000397037 564 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AL035079.1-201ENST00000405210 287 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 SNORA79B-201ENST00000410557 148 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC4.51□□□□□ -1.69
LMX1BO60663 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.51□□□□□ -1.69
LMX1BO60663 AC115285.1-201ENST00000424879 736 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.51□□□□□ -1.69
LMX1BO60663 AL358794.1-201ENST00000445689 381 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC004022.1-201ENST00000447766 1066 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AL157884.3-201ENST00000448273 1184 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AL627224.1-201ENST00000448334 444 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 BX842559.2-201ENST00000451418 605 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC4.51□□□□□ -1.69
LMX1BO60663 HIGD1AP8-201ENST00000453927 274 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 DNAJB5P1-201ENST00000454004 806 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC079168.1-201ENST00000458741 345 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC4.51□□□□□ -1.69
LMX1BO60663 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.51□□□□□ -1.69
LMX1BO60663 MTND4LP2-201ENST00000502312 285 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 AC021087.2-201ENST00000504656 1203 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC113420.1-201ENST00000507903 571 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC117522.2-201ENST00000510049 657 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC133963.2-201ENST00000513686 578 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC4.51□□□□□ -1.69
LMX1BO60663 AC006427.1-201ENST00000514359 712 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 RNU6-941P-201ENST00000516346 108 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 HAUS1P3-201ENST00000523909 662 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC135279.1-201ENST00000543493 504 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LMX1BO60663 LSM3P2-201ENST00000551246 273 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 PCNPP1-201ENST00000552501 511 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 OR11J2P-201ENST00000555298 907 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC4.51□□□□□ -1.69
LMX1BO60663 AC023824.3-201ENST00000569003 562 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC008088.1-201ENST00000580993 280 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC010487.1-201ENST00000594408 1172 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 AC146944.4-201ENST00000602697 718 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC069307.1-201ENST00000602820 447 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC4.51□□□□□ -1.69
LMX1BO60663 AC005021.1-201ENST00000608730 355 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AL592494.3-201ENST00000609485 464 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC093673.2-201ENST00000609674 331 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC4.51□□□□□ -1.69
LMX1BO60663 AL353662.3-201ENST00000625131 237 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AC073869.10-201ENST00000642016 354 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
LMX1BO60663 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
LMX1BO60663 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 MTND5P31-201ENST00000419366 1374 ntBASIC4.51□□□□□ -1.69
LMX1BO60663 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
LMX1BO60663 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.51□□□□□ -1.69
LMX1BO60663 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.51□□□□□ -1.69
LMX1BO60663 AC010266.2-201ENST00000564741 3255 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
LMX1BO60663 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 AC006484.1-201ENST00000435086 1884 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 CASC19-281ENST00000642118 1554 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
LMX1BO60663 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
LMX1BO60663 RNU4-28P-201ENST00000364739 141 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 SNORD116-2-201ENST00000384274 95 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 SNORD116-6-201ENST00000384711 96 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 PEX12P1-201ENST00000400284 1048 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 RNA5SP487-201ENST00000410186 122 ntBASIC4.5□□□□□ -1.69
LMX1BO60663 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC4.5□□□□□ -1.69
LMX1BO60663 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms