Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 VTA1P1-201ENST00000414044 866 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 FAR1P1-201ENST00000427163 934 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 HMGN2P27-201ENST00000427352 270 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 COX6CP13-201ENST00000428703 226 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AC092647.3-201ENST00000443044 633 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AC092647.2-201ENST00000452998 253 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 EIF4A2P2-201ENST00000455776 1070 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 RN7SL610P-201ENST00000463845 291 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 RN7SL443P-201ENST00000464331 290 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 RPL23AP71-201ENST00000470966 469 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AC016559.2-201ENST00000510759 359 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AC063949.1-201ENST00000552900 865 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 OR4U1P-201ENST00000554958 912 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 LINC00557-201ENST00000563184 1279 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 MIR3691-201ENST00000578066 90 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 RN7SL290P-201ENST00000578661 300 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 AP001033.2-201ENST00000609701 1003 ntBASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC6.61□□□□□ -1.35
CHMP4AQ9BY43 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 MAPK10-263ENST00000641052 4307 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AC007618.1-201ENST00000366455 732 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 RNU6ATAC7P-201ENST00000408111 127 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 RNU2-65P-201ENST00000410162 185 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 RN7SKP114-201ENST00000410327 279 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AC010385.1-201ENST00000412374 256 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 DYNLL1P7-201ENST00000429273 258 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 MTND2P40-201ENST00000436718 841 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AL354714.3-201ENST00000447284 493 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AC090114.3-201ENST00000479267 829 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 RN7SL441P-201ENST00000492388 296 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AC023424.1-201ENST00000496058 459 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AC008953.1-201ENST00000497334 318 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 HAUS1P3-201ENST00000523909 662 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 EDDM3DP-201ENST00000554692 434 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AL731537.2-201ENST00000561565 951 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 MIR4458-201ENST00000578872 75 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AC011815.3-201ENST00000624194 473 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 AC083865.1-201ENST00000636634 831 ntBASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC6.6□□□□□ -1.35
CHMP4AQ9BY43 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC022417.1-201ENST00000624768 1303 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 RNU1-106P-201ENST00000384382 164 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AL133270.1-201ENST00000402635 279 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 BX119904.1-201ENST00000432026 348 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 PTMAP6-201ENST00000439110 327 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 MTND2P25-201ENST00000449028 610 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 OR52A4P-202ENST00000481634 799 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 HMGN2P25-201ENST00000486956 268 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 RPL30P11-201ENST00000495304 339 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 FTH1P24-201ENST00000503502 462 ntBASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC6.59□□□□□ -1.35
CHMP4AQ9BY43 COX6B1P5-201ENST00000509843 249 ntBASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms