Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 RNA5SP392-201ENST00000516905 112 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 HIGD1AP18-201ENST00000520730 278 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AL049839.1-201ENST00000556151 657 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 RNF138P2-201ENST00000603490 592 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 MEMO1P5-201ENST00000604810 406 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS39Q96JC1 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AL022401.1-201ENST00000619498 108 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 AC015804.1-201ENST00000622935 435 ntBASIC4.84□□□□□ -1.63
VPS39Q96JC1 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS39Q96JC1 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS39Q96JC1 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
VPS39Q96JC1 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
VPS39Q96JC1 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
VPS39Q96JC1 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS39Q96JC1 AL133268.1-201ENST00000405676 1401 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 Z73965.1-201ENST00000623412 2297 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS39Q96JC1 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 VN1R37P-201ENST00000419096 748 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 RNF19BPX-201ENST00000426224 625 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 AL445433.1-201ENST00000457507 257 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 RN7SL558P-201ENST00000497468 299 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC021087.2-201ENST00000504656 1203 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC108120.2-201ENST00000512973 294 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 RNU6-1308P-201ENST00000516817 103 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 IMMP1LP1-201ENST00000605170 488 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC079791.1-201ENST00000605356 973 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC010424.2-201ENST00000607594 443 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC093799.2-201ENST00000610062 578 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 AC009163.6-201ENST00000612367 342 ntBASIC4.83□□□□□ -1.64
VPS39Q96JC1 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS39Q96JC1 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS39Q96JC1 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS39Q96JC1 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS39Q96JC1 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC017002.4-201ENST00000604721 1525 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC007342.9-201ENST00000623877 1385 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 MAPK10-303ENST00000641324 3959 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 AL118496.1-201ENST00000440201 1812 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 CR788268.1-201ENST00000603931 1809 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS39Q96JC1 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 RNU1-83P-201ENST00000363426 164 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 DPY19L1P2-201ENST00000426647 915 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC005033.1-201ENST00000428904 813 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 HMGB3P21-201ENST00000452483 547 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC018638.3-201ENST00000461273 132 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 RPL23AP12-201ENST00000467573 473 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 RN7SL629P-201ENST00000489622 285 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC006499.3-201ENST00000506077 748 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 MRPS33P2-201ENST00000507850 322 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 NDUFB4P12-201ENST00000513465 390 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 HAUS8P1-201ENST00000549005 542 ntBASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.82□□□□□ -1.64
VPS39Q96JC1 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms