Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Gm33142-201ENSMUST00000193913 867 ntBASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Gm17808-201ENSMUST00000200859 894 ntBASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Gm18421-201ENSMUST00000204122 625 ntBASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC17.95■□□□□ 0.46
Cpsf3Q9QXK7 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 AC154471.1-201ENSMUST00000224418 436 ntBASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Cpsf3Q9QXK7 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Gm11950-201ENSMUST00000121615 838 ntBASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Gm29707-201ENSMUST00000196325 491 ntBASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Cpsf3Q9QXK7 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Gm6623-201ENSMUST00000173570 544 ntBASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
Cpsf3Q9QXK7 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Cpsf3Q9QXK7 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms