Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lsm1Q8VC85 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC15.99■□□□□ 0.15
Lsm1Q8VC85 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lsm1Q8VC85 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lsm1Q8VC85 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lsm1Q8VC85 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Lsm1Q8VC85 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lsm1Q8VC85 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lsm1Q8VC85 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lsm1Q8VC85 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lsm1Q8VC85 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 AC156016.1-201ENSMUST00000227190 1035 ntBASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Lsm1Q8VC85 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Gm3375-201ENSMUST00000203929 796 ntBASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Dancr-204ENSMUST00000132389 2347 ntBASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 AC154855.1-201ENSMUST00000227353 1458 ntBASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Lsm1Q8VC85 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Lsm1Q8VC85 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
Lsm1Q8VC85 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Lsm1Q8VC85 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC15.96■□□□□ 0.15
Lsm1Q8VC85 Gm715-201ENSMUST00000117865 831 ntBASIC15.96■□□□□ 0.15
Lsm1Q8VC85 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Lsm1Q8VC85 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Lsm1Q8VC85 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Lsm1Q8VC85 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Lsm1Q8VC85 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Lsm1Q8VC85 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Lsm1Q8VC85 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Lsm1Q8VC85 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Lsm1Q8VC85 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Lsm1Q8VC85 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Lsm1Q8VC85 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Lsm1Q8VC85 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms