Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Vps53Q8CCB4 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Vps53Q8CCB4 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Vps53Q8CCB4 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Vps53Q8CCB4 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Vps53Q8CCB4 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Gm13474-201ENSMUST00000122466 815 ntBASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Vps53Q8CCB4 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Gm16499-203ENSMUST00000204633 2177 ntBASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Tfap2a-209ENSMUST00000225180 1828 ntBASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Gm4217-201ENSMUST00000182243 1002 ntBASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Vps53Q8CCB4 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC19.39■□□□□ 0.7
Vps53Q8CCB4 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Vps53Q8CCB4 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Vps53Q8CCB4 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Vps53Q8CCB4 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Vps53Q8CCB4 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Gm7284-201ENSMUST00000131667 944 ntBASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Gm17661-201ENSMUST00000170317 270 ntBASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Vps53Q8CCB4 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Gm8258-201ENSMUST00000055593 1449 ntBASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Vps53Q8CCB4 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Gm16401-202ENSMUST00000197463 2074 ntBASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Gm24841-201ENSMUST00000158676 357 ntBASIC19.37■□□□□ 0.69
Vps53Q8CCB4 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms