Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
Ddx55Q6ZPL9 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx55Q6ZPL9 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx55Q6ZPL9 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx55Q6ZPL9 Gm15590-201ENSMUST00000078419 552 ntBASIC18.96■□□□□ 0.63
Ddx55Q6ZPL9 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx55Q6ZPL9 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Ddx55Q6ZPL9 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ddx55Q6ZPL9 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Ddx55Q6ZPL9 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Gm7507-201ENSMUST00000183053 1008 ntBASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Gm37584-201ENSMUST00000193595 1290 ntBASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 CT943659.1-201ENSMUST00000215459 326 ntBASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 AC154222.1-201ENSMUST00000223882 475 ntBASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC18.95■□□□□ 0.62
Ddx55Q6ZPL9 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Gm43575-201ENSMUST00000196420 516 ntBASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ddx55Q6ZPL9 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 AV026068-213ENSMUST00000223675 1171 ntBASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ddx55Q6ZPL9 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Gm6736-201ENSMUST00000166583 948 ntBASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Gm6089-201ENSMUST00000197666 938 ntBASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ddx55Q6ZPL9 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Gm12260-201ENSMUST00000122447 411 ntBASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ddx55Q6ZPL9 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms