Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Rtl3Q6P1Y1 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Rtl3Q6P1Y1 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Gm6190-201ENSMUST00000220683 1374 ntBASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Phf7-203ENSMUST00000226565 1971 ntBASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Rtl3Q6P1Y1 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Rtl3Q6P1Y1 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Gm11355-201ENSMUST00000121120 306 ntBASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Rtl3Q6P1Y1 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Gm7284-201ENSMUST00000131667 944 ntBASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Rtl3Q6P1Y1 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
Rtl3Q6P1Y1 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Rtl3Q6P1Y1 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 50.2 ms