Protein–RNA interactions for Protein: Q5U4C3

Scaf1, Splicing factor, arginine/serine-rich 19, mousemouse

Known RBP Predictions only

Length 1,256 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf1Q5U4C3 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Gm12350-201ENSMUST00000121208 462 ntBASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Gm1401-201ENSMUST00000122048 772 ntBASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC21.72■■□□□ 1.07
Scaf1Q5U4C3 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Mir6404-201ENSMUST00000183699 94 ntBASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Gm5837-201ENSMUST00000191844 1369 ntBASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Scaf1Q5U4C3 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.07
Scaf1Q5U4C3 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Scaf1Q5U4C3 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Gm25990-201ENSMUST00000102440 86 ntBASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Gm7230-201ENSMUST00000173026 815 ntBASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Gm5712-201ENSMUST00000199748 1043 ntBASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Dmtn-207ENSMUST00000228001 2437 ntBASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Scaf1Q5U4C3 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Gm25406-201ENSMUST00000157599 105 ntBASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Vti1a-206ENSMUST00000225529 1244 ntBASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC21.69■■□□□ 1.06
Scaf1Q5U4C3 Gm37519-201ENSMUST00000191687 2210 ntBASIC21.68■■□□□ 1.06
Scaf1Q5U4C3 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scaf1Q5U4C3 Zcchc6-207ENSMUST00000225576 2499 ntBASIC21.68■■□□□ 1.06
Scaf1Q5U4C3 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scaf1Q5U4C3 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC21.68■■□□□ 1.06
Scaf1Q5U4C3 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC21.68■■□□□ 1.06
Scaf1Q5U4C3 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Scaf1Q5U4C3 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC21.68■■□□□ 1.06
Scaf1Q5U4C3 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Scaf1Q5U4C3 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Scaf1Q5U4C3 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Slc35b2-202ENSMUST00000223987 1766 ntBASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Mir5126-201ENSMUST00000175513 77 ntBASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Scaf1Q5U4C3 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms