Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trav6d-4Q5R1I0 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Trav6d-4Q5R1I0 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Trav6d-4Q5R1I0 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Gm11620-201ENSMUST00000118770 1845 ntBASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trav6d-4Q5R1I0 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Gm44450-201ENSMUST00000199528 114 ntBASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trav6d-4Q5R1I0 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 AC107711.5-202ENSMUST00000226429 702 ntBASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Gm45203-201ENSMUST00000206384 1831 ntBASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trav6d-4Q5R1I0 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Gm10459-201ENSMUST00000202708 1155 ntBASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Gm18421-201ENSMUST00000204122 625 ntBASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Gm45328-201ENSMUST00000210942 917 ntBASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 AC130713.1-201ENSMUST00000228853 1096 ntBASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Trav6d-4Q5R1I0 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trav6d-4Q5R1I0 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC13.99□□□□□ -0.17
Trav6d-4Q5R1I0 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC13.99□□□□□ -0.17
Trav6d-4Q5R1I0 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC13.99□□□□□ -0.17
Trav6d-4Q5R1I0 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Trav6d-4Q5R1I0 Gm29707-201ENSMUST00000196325 491 ntBASIC13.99□□□□□ -0.17
Trav6d-4Q5R1I0 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trav6d-4Q5R1I0 Gm10819-201ENSMUST00000099988 561 ntBASIC13.99□□□□□ -0.17
Trav6d-4Q5R1I0 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trav6d-4Q5R1I0 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trav6d-4Q5R1I0 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Trav6d-4Q5R1I0 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trav6d-4Q5R1I0 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms