Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Phf7-203ENSMUST00000226565 1971 ntBASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Upf3bQ3ULL6 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Gm21559-201ENSMUST00000220638 855 ntBASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Gm8587-201ENSMUST00000076538 843 ntBASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Upf3bQ3ULL6 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Upf3bQ3ULL6 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC17.83■□□□□ 0.45
Upf3bQ3ULL6 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Upf3bQ3ULL6 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Upf3bQ3ULL6 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Upf3bQ3ULL6 Gm10013-201ENSMUST00000106074 672 ntBASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Upf3bQ3ULL6 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Gm45203-201ENSMUST00000206384 1831 ntBASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.82■□□□□ 0.44
Upf3bQ3ULL6 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Upf3bQ3ULL6 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Upf3bQ3ULL6 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms