Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Gm4217-201ENSMUST00000182243 1002 ntBASIC19.62■□□□□ 0.73
Limch1Q3UH68 Gm7791-201ENSMUST00000219066 539 ntBASIC19.62■□□□□ 0.73
Limch1Q3UH68 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Limch1Q3UH68 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Limch1Q3UH68 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Gm16061-201ENSMUST00000122167 857 ntBASIC19.6■□□□□ 0.73
Limch1Q3UH68 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Gm27741-201ENSMUST00000185060 237 ntBASIC19.6■□□□□ 0.73
Limch1Q3UH68 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Limch1Q3UH68 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Limch1Q3UH68 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Limch1Q3UH68 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
Limch1Q3UH68 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Limch1Q3UH68 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Limch1Q3UH68 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Limch1Q3UH68 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Limch1Q3UH68 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Limch1Q3UH68 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Limch1Q3UH68 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Limch1Q3UH68 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Gm14859-201ENSMUST00000117752 357 ntBASIC19.57■□□□□ 0.72
Limch1Q3UH68 Gm25016-201ENSMUST00000158399 131 ntBASIC19.57■□□□□ 0.72
Limch1Q3UH68 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Limch1Q3UH68 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 75.2 ms