Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Rnf180Q3U827 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC19.58■□□□□ 0.72
Rnf180Q3U827 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Rnf180Q3U827 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Rnf180Q3U827 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
Rnf180Q3U827 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Rnf180Q3U827 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Rnf180Q3U827 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Gm15442-201ENSMUST00000117905 1527 ntBASIC19.57■□□□□ 0.72
Rnf180Q3U827 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.57■□□□□ 0.72
Rnf180Q3U827 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Gm43125-201ENSMUST00000201724 730 ntBASIC19.57■□□□□ 0.72
Rnf180Q3U827 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf180Q3U827 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Rprl2-201ENSMUST00000157150 290 ntBASIC19.56■□□□□ 0.72
Rnf180Q3U827 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Gm18889-201ENSMUST00000174284 929 ntBASIC19.56■□□□□ 0.72
Rnf180Q3U827 Gm27301-201ENSMUST00000184012 127 ntBASIC19.56■□□□□ 0.72
Rnf180Q3U827 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Gm37153-201ENSMUST00000193637 231 ntBASIC19.56■□□□□ 0.72
Rnf180Q3U827 Gm7774-201ENSMUST00000200064 533 ntBASIC19.56■□□□□ 0.72
Rnf180Q3U827 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC19.56■□□□□ 0.72
Rnf180Q3U827 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC19.56■□□□□ 0.72
Rnf180Q3U827 Wdyhv1-203ENSMUST00000226889 394 ntBASIC19.56■□□□□ 0.72
Rnf180Q3U827 AC155729.1-201ENSMUST00000227758 544 ntBASIC19.56■□□□□ 0.72
Rnf180Q3U827 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rnf180Q3U827 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC19.56■□□□□ 0.72
Rnf180Q3U827 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf180Q3U827 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC19.55■□□□□ 0.72
Rnf180Q3U827 AC127302.2-201ENSMUST00000215212 268 ntBASIC19.55■□□□□ 0.72
Rnf180Q3U827 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Gm2423-201ENSMUST00000074863 733 ntBASIC19.55■□□□□ 0.72
Rnf180Q3U827 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rnf180Q3U827 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Gm9889-202ENSMUST00000206983 1577 ntBASIC19.54■□□□□ 0.72
Rnf180Q3U827 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Gm25857-201ENSMUST00000082788 129 ntBASIC19.54■□□□□ 0.72
Rnf180Q3U827 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.54■□□□□ 0.72
Rnf180Q3U827 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Gm42934-201ENSMUST00000196920 1345 ntBASIC19.53■□□□□ 0.72
Rnf180Q3U827 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Gm2308-201ENSMUST00000166539 1004 ntBASIC19.53■□□□□ 0.72
Rnf180Q3U827 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Rnf180Q3U827 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms