Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Col28a1Q2UY11 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Col28a1Q2UY11 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Col28a1Q2UY11 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Mir1199-201ENSMUST00000117015 119 ntBASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Gm15847-201ENSMUST00000121417 1065 ntBASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.2■□□□□ 0.18
Col28a1Q2UY11 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Col28a1Q2UY11 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 CT010444.2-201ENSMUST00000217877 1629 ntBASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Gm10654-201ENSMUST00000098653 1633 ntBASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Col28a1Q2UY11 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Cbx8-201ENSMUST00000026663 3580 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Gm13158-201ENSMUST00000122007 736 ntBASIC16.18■□□□□ 0.18
Col28a1Q2UY11 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms