Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Ptchd3Q0EEE2 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ptchd3Q0EEE2 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Nrn1-203ENSMUST00000223611 1443 ntBASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Gm18666-201ENSMUST00000190039 958 ntBASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ptchd3Q0EEE2 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Gm42545-201ENSMUST00000202755 922 ntBASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC16.12■□□□□ 0.17
Ptchd3Q0EEE2 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Ptchd3Q0EEE2 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms