Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC18.03■□□□□ 0.48
RaraP11416 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
RaraP11416 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.03■□□□□ 0.48
RaraP11416 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
RaraP11416 Gm18958-201ENSMUST00000174258 762 ntBASIC18.03■□□□□ 0.48
RaraP11416 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RaraP11416 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC18.03■□□□□ 0.48
RaraP11416 AC069562.2-201ENSMUST00000224644 2146 ntBASIC18.03■□□□□ 0.48
RaraP11416 Timm23-208ENSMUST00000226683 750 ntBASIC18.03■□□□□ 0.48
RaraP11416 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
RaraP11416 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC18.03■□□□□ 0.48
RaraP11416 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
RaraP11416 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
RaraP11416 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RaraP11416 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.02■□□□□ 0.48
RaraP11416 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RaraP11416 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RaraP11416 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RaraP11416 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.02■□□□□ 0.48
RaraP11416 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RaraP11416 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC18.02■□□□□ 0.48
RaraP11416 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
RaraP11416 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
RaraP11416 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
RaraP11416 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC18.02■□□□□ 0.48
RaraP11416 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RaraP11416 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
RaraP11416 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
RaraP11416 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
RaraP11416 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
RaraP11416 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RaraP11416 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RaraP11416 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RaraP11416 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
RaraP11416 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
RaraP11416 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
RaraP11416 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
RaraP11416 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
RaraP11416 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC18.01■□□□□ 0.47
RaraP11416 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
RaraP11416 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC18.01■□□□□ 0.47
RaraP11416 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.01■□□□□ 0.47
RaraP11416 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
RaraP11416 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
RaraP11416 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC18.01■□□□□ 0.47
RaraP11416 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
RaraP11416 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
RaraP11416 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
RaraP11416 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18■□□□□ 0.47
RaraP11416 Gm5297-201ENSMUST00000198555 1171 ntBASIC18■□□□□ 0.47
RaraP11416 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC18■□□□□ 0.47
RaraP11416 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18■□□□□ 0.47
RaraP11416 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18■□□□□ 0.47
RaraP11416 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
RaraP11416 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC18■□□□□ 0.47
RaraP11416 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC18■□□□□ 0.47
RaraP11416 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
RaraP11416 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.99■□□□□ 0.47
RaraP11416 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
RaraP11416 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms