Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Trav16d-dv11A0A075B617 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav16d-dv11A0A075B617 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Trav16d-dv11A0A075B617 Gm45212-201ENSMUST00000205831 3403 ntBASIC12.32□□□□□ -0.44
Trav16d-dv11A0A075B617 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Trav16d-dv11A0A075B617 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC12.32□□□□□ -0.44
Trav16d-dv11A0A075B617 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav16d-dv11A0A075B617 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav16d-dv11A0A075B617 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Trav16d-dv11A0A075B617 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Nespas-201ENSMUST00000143738 1083 ntBASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Gm21956-201ENSMUST00000179946 522 ntBASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC12.31□□□□□ -0.44
Trav16d-dv11A0A075B617 Gm43034-201ENSMUST00000198678 1364 ntBASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Gm6420-201ENSMUST00000193885 723 ntBASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Trav16d-dv11A0A075B617 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Gm13401-201ENSMUST00000117074 291 ntBASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 AC140264.2-202ENSMUST00000218746 817 ntBASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Trav16d-dv11A0A075B617 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav16d-dv11A0A075B617 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC12.28□□□□□ -0.44
Trav16d-dv11A0A075B617 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav16d-dv11A0A075B617 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Trav16d-dv11A0A075B617 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Trav16d-dv11A0A075B617 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms