Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
LHX3Q9UBR4 AC007342.7-201ENST00000624610 2337 ntBASIC4.71□□□□□ -1.66
LHX3Q9UBR4 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 ZNF137P-201ENST00000456718 1920 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC021146.4-201ENST00000309229 279 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 SNORD113.2-201ENST00000364166 89 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 MTND3P20-201ENST00000407663 186 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 RPS26P4-201ENST00000431743 355 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AL606490.7-201ENST00000433136 191 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AP002345.1-201ENST00000456493 928 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC104763.1-201ENST00000475274 360 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 HMGB1P47-201ENST00000511281 589 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC034244.2-201ENST00000514668 858 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 IGHV3-63-201ENST00000518422 341 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC026616.1-201ENST00000523157 525 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC015912.2-201ENST00000571053 181 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC234771.5-201ENST00000600161 514 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 KATNBL1P1-201ENST00000605192 748 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC034236.3-201ENST00000605999 461 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AP000346.3-201ENST00000622821 210 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AL359757.1-201ENST00000623176 255 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 KARSP3-201ENST00000571212 1504 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AL132640.2-201ENST00000559968 1698 ntBASIC4.7□□□□□ -1.66
LHX3Q9UBR4 AC125257.1-201ENST00000560400 2930 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 OR5T3-201ENST00000303059 1023 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 RNU1-83P-201ENST00000363426 164 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC119751.6-201ENST00000416712 186 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AL590623.1-201ENST00000427864 105 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 YWHAZP2-201ENST00000440317 728 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AL133244.1-201ENST00000456007 258 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 SCARNA10-201ENST00000459255 330 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC023424.1-201ENST00000496058 459 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 HAUS1P1-201ENST00000505275 832 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 BTG4P1-201ENST00000510421 183 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 OR5AN2P-201ENST00000534535 896 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC012414.2-201ENST00000559474 187 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 MIR4330-201ENST00000579077 105 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC130352.1-201ENST00000602979 661 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC104785.1-201ENST00000603220 588 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AL133338.2-201ENST00000604292 736 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC107068.1-201ENST00000563286 4218 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 DHX40P1-201ENST00000588725 1412 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 OR14L1P-202ENST00000641545 3009 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 SMG1P4-204ENST00000523028 4131 ntBASIC4.69□□□□□ -1.66
LHX3Q9UBR4 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
LHX3Q9UBR4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.68□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms