Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 NFIA-204ENST00000371187 2683 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 BX284613.1-201ENST00000452221 1641 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 RNU6-692P-201ENST00000384496 107 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 MIR506-201ENST00000384998 124 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 RN7SKP281-201ENST00000410472 352 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 RNU4-55P-201ENST00000410731 137 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 RPS3AP3-201ENST00000411933 242 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC004690.1-201ENST00000418216 328 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 BX890604.2-201ENST00000427883 474 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 PRH1-201ENST00000428168 603 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 MTND5P14-201ENST00000441481 1267 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 CALM1P1-201ENST00000442082 433 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 RPL7P48-201ENST00000461513 746 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 RPS7P10-201ENST00000464254 603 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 EIF3LP3-201ENST00000495197 822 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 HMGN1P12-201ENST00000499125 195 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC091965.3-201ENST00000506236 208 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 RNU6-885P-201ENST00000516607 104 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC123904.3-201ENST00000547218 814 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC012146.2-201ENST00000576545 416 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 MIR5697-201ENST00000578045 78 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 MIR3682-201ENST00000581338 84 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 MIR4732-201ENST00000581873 76 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC073046.2-201ENST00000604756 527 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AL390877.1-201ENST00000605704 214 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 MIR6085-201ENST00000618314 110 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC009159.1-201ENST00000618386 642 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC243756.2-201ENST00000618406 463 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AL138693.1-201ENST00000622219 129 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 AC024614.3-201ENST00000637860 256 ntBASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 FAM216B-202ENST00000537894 3300 ntAPPRIS P1 TSL 4 BASIC6.14□□□□□ -1.43
UBE3DQ7Z6J8 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 FARSBP1-201ENST00000435808 1778 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC093311.1-201ENST00000506586 2021 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 HIST1H1T-201ENST00000338379 718 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 RNU6-582P-201ENST00000362989 107 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 RNU6-877P-201ENST00000383868 107 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 Y_RNA.548-201ENST00000384656 105 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MIR1303-201ENST00000408625 86 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 RN7SKP221-201ENST00000410420 301 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 EEF1A1P40-201ENST00000412883 573 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 USP9YP27-201ENST00000418455 438 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MTCO1P20-201ENST00000425366 358 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 IGLV3-4-201ENST00000432300 244 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AC104850.1-201ENST00000435940 476 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 AL031681.1-201ENST00000443304 400 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 RPS27AP15-201ENST00000447672 466 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 MGAT2P1-201ENST00000449718 797 ntBASIC6.13□□□□□ -1.43
UBE3DQ7Z6J8 SLC31A1P1-201ENST00000451221 567 ntBASIC6.13□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 145.1 ms