Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 RNU1-43P-201ENST00000365052 165 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 SNORA56-201ENST00000383966 129 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 RNU1-106P-201ENST00000384382 164 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 SNORA67-201ENST00000384423 137 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 RN7SKP97-201ENST00000410966 333 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC005005.2-201ENST00000420779 380 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC246680.2-201ENST00000422106 389 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC108075.1-201ENST00000424692 529 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 MTCO1P52-201ENST00000433928 531 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 USP9YP24-201ENST00000434374 697 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 MTND2P40-201ENST00000436718 841 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC096775.1-201ENST00000437724 448 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 USP9YP17-201ENST00000444617 696 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC105399.1-202ENST00000447303 205 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC073850.1-201ENST00000449243 255 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 OR51B8P-201ENST00000449892 769 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AL389915.2-201ENST00000454576 441 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC093166.2-201ENST00000455969 1017 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC037198.2-201ENST00000478845 733 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC105313.1-201ENST00000509121 353 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 MTCO3P28-201ENST00000513351 515 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 RNU6-311P-201ENST00000516224 102 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 OR8Q1P-201ENST00000526467 655 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 OR8I1P-201ENST00000529291 931 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC005951.1-201ENST00000576706 485 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 MIR4660-201ENST00000583549 74 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC006116.3-201ENST00000592968 361 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC006272.2-201ENST00000594725 163 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 NIFKP6-201ENST00000598115 845 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AP002906.1-201ENST00000603405 233 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 DUXAP3-201ENST00000603616 594 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC096586.1-201ENST00000610267 561 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 U6.48-201ENST00000618523 106 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC021106.3-201ENST00000623925 531 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC024023.1-201ENST00000624530 922 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AC017104.5-201ENST00000637647 639 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 AL355578.1-201ENST00000607405 1328 ntBASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
SLC44A4Q53GD3 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.71□□□□□ -1.49
SLC44A4Q53GD3 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.49
SLC44A4Q53GD3 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.49
SLC44A4Q53GD3 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 U3.2-201ENST00000362981 210 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 MIR130A-201ENST00000385274 89 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 MTCO2P31-201ENST00000402702 684 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC079809.1-201ENST00000415468 276 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC093162.1-201ENST00000419682 124 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 MTCO2P21-201ENST00000419780 677 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 AC009784.1-201ENST00000426484 460 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 GTF2IP3-201ENST00000433887 494 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 HMGB3P10-201ENST00000434734 572 ntBASIC5.71□□□□□ -1.5
SLC44A4Q53GD3 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms