Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS35Q96QK1 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 AP001273.1-201ENST00000624493 3152 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS35Q96QK1 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS35Q96QK1 AL607077.1-201ENST00000401718 499 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AL133270.1-201ENST00000402635 279 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 TBCAP2-201ENST00000416175 326 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS35Q96QK1 RFESDP1-201ENST00000422350 461 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 RPS27P18-201ENST00000431701 247 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC092162.1-201ENST00000432828 434 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC097523.2-201ENST00000435551 652 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 GTF3AP5-201ENST00000442645 697 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC073648.4-201ENST00000442655 781 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 AL356981.1-201ENST00000454879 684 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 RPL23AP56-201ENST00000460778 453 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 LARP7P4-201ENST00000481075 878 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC109635.6-201ENST00000525487 1113 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC009117.1-201ENST00000563948 554 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 AL445528.2-201ENST00000620582 470 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 AC015871.5-202ENST00000623252 701 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS35Q96QK1 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS35Q96QK1 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS35Q96QK1 SMG1P6-201ENST00000532337 2930 ntBASIC4.85□□□□□ -1.63
VPS35Q96QK1 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 IRF5P1-201ENST00000504852 2164 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS35Q96QK1 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS35Q96QK1 RNU6-1251P-201ENST00000364502 107 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 RPS24P12-201ENST00000402084 394 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 AL357515.1-201ENST00000402967 542 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 AL139039.2-201ENST00000407436 479 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 RN7SKP199-201ENST00000410325 305 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 AC114755.2-201ENST00000413520 361 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 MAPRE1P3-201ENST00000435438 796 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 OR52J1P-201ENST00000450596 932 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 OTX2P1-201ENST00000450956 354 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 AURKAPS2-201ENST00000454983 333 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 RPS3AP41-201ENST00000462701 778 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 ENPP7P9-201ENST00000514456 627 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 AL049830.4-201ENST00000555149 351 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 MIR3934-201ENST00000579806 107 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 RN7SL435P-201ENST00000584418 282 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 BNIP3P7-201ENST00000605641 516 ntBASIC4.84□□□□□ -1.63
VPS35Q96QK1 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
VPS35Q96QK1 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
VPS35Q96QK1 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS35Q96QK1 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS35Q96QK1 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
VPS35Q96QK1 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS35Q96QK1 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
VPS35Q96QK1 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS35Q96QK1 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS35Q96QK1 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS35Q96QK1 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS35Q96QK1 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS35Q96QK1 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS35Q96QK1 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms