Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 IPPKP1-201ENST00000422501 768 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AL645608.4-201ENST00000423619 154 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA3P55318 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA3P55318 AP000281.1-201ENST00000444036 316 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AL161636.2-201ENST00000445179 927 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 HMGN1P36-201ENST00000446623 298 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AC022431.1-201ENST00000450941 438 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC3.46□□□□□ -1.86
FOXA3P55318 RPS27AP2-201ENST00000457576 465 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA3P55318 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA3P55318 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA3P55318 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA3P55318 TRIM36-IT1-201ENST00000503723 881 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 RCHY1-206ENST00000507014 650 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA3P55318 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC3.46□□□□□ -1.86
FOXA3P55318 VTA1P2-201ENST00000520205 911 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 MAL2-208ENST00000523307 556 ntTSL 4 BASIC3.46□□□□□ -1.86
FOXA3P55318 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA3P55318 OR5M7P-201ENST00000526140 972 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 TOMM20P1-201ENST00000534518 427 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AC027544.3-201ENST00000535082 757 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AC068446.3-201ENST00000555285 382 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 CYP4A43P-201ENST00000568156 121 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.46□□□□□ -1.86
FOXA3P55318 MIR5010-201ENST00000582846 120 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA3P55318 ELOCP28-201ENST00000590044 317 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AL139395.1-201ENST00000603662 160 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AL499605.1-201ENST00000604628 403 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AP002360.3-201ENST00000607673 710 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 MIR6780B-201ENST00000610307 79 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 MIR6071-201ENST00000616741 78 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 AC074276.2-201ENST00000619891 348 ntBASIC3.46□□□□□ -1.86
FOXA3P55318 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.46□□□□□ -1.86
FOXA3P55318 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA3P55318 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA3P55318 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC3.46□□□□□ -1.86
FOXA3P55318 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.46□□□□□ -1.86
FOXA3P55318 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA3P55318 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC3.46□□□□□ -1.86
FOXA3P55318 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC3.46□□□□□ -1.86
FOXA3P55318 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA3P55318 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA3P55318 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
FOXA3P55318 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
FOXA3P55318 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.46□□□□□ -1.86
FOXA3P55318 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC3.45□□□□□ -1.86
FOXA3P55318 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.45□□□□□ -1.86
FOXA3P55318 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA3P55318 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA3P55318 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA3P55318 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA3P55318 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA3P55318 AC011266.1-201ENST00000624119 3569 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA3P55318 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA3P55318 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.45□□□□□ -1.86
FOXA3P55318 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA3P55318 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXA3P55318 RNU1-15P-201ENST00000353977 144 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 RNA5SP502-201ENST00000362694 119 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 U3.2-201ENST00000362981 210 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 RN7SKP115-201ENST00000363177 317 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 RNA5SP510-201ENST00000364697 99 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 RNA5SP428-201ENST00000365129 132 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA3P55318 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXA3P55318 RNU1-44P-201ENST00000384453 163 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 RNA5SP284-201ENST00000384547 118 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC013268.2-201ENST00000420753 337 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC062016.2-201ENST00000420950 676 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXA3P55318 HNRNPA3P4-201ENST00000427514 803 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 MTCO1P51-201ENST00000427672 1060 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC073335.1-201ENST00000427776 363 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 RPL23AP25-201ENST00000430973 463 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AL353597.2-202ENST00000434901 373 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 HLA-N-201ENST00000437516 135 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXA3P55318 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA3P55318 EIF4A1P6-201ENST00000448133 1210 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA3P55318 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC3.45□□□□□ -1.86
FOXA3P55318 RN7SL184P-201ENST00000488308 297 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXA3P55318 PRELID3BP7-201ENST00000503606 469 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA3P55318 PARP4P3-201ENST00000510265 317 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 RNA5SP473-201ENST00000516402 125 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA3P55318 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC3.45□□□□□ -1.86
FOXA3P55318 BUD31P1-201ENST00000521828 359 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC3.45□□□□□ -1.86
FOXA3P55318 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA3P55318 MIR5699-201ENST00000578903 90 ntBASIC3.45□□□□□ -1.86
FOXA3P55318 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms