Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
COL18A1P39060 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL18A1P39060 SNX18P3-202ENST00000565670 1750 ntBASIC5.84□□□□□ -1.47
COL18A1P39060 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.84□□□□□ -1.47
COL18A1P39060 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL18A1P39060 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
COL18A1P39060 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.84□□□□□ -1.47
COL18A1P39060 AC009237.5-201ENST00000414271 501 ntBASIC5.84□□□□□ -1.47
COL18A1P39060 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.84□□□□□ -1.47
COL18A1P39060 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL18A1P39060 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
COL18A1P39060 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.84□□□□□ -1.47
COL18A1P39060 RNA5SP519-201ENST00000516480 119 ntBASIC5.84□□□□□ -1.47
COL18A1P39060 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.84□□□□□ -1.47
COL18A1P39060 CCNG2P1-201ENST00000549521 1000 ntBASIC5.84□□□□□ -1.47
COL18A1P39060 ADAD1P2-201ENST00000588476 646 ntBASIC5.84□□□□□ -1.47
COL18A1P39060 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
COL18A1P39060 TMEM30CP-203ENST00000637814 1035 ntBASIC5.84□□□□□ -1.47
COL18A1P39060 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL18A1P39060 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
COL18A1P39060 AL133243.3-201ENST00000617415 3004 ntBASIC5.84□□□□□ -1.47
COL18A1P39060 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
COL18A1P39060 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL18A1P39060 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.84□□□□□ -1.48
COL18A1P39060 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
COL18A1P39060 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.83□□□□□ -1.48
COL18A1P39060 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL18A1P39060 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL18A1P39060 SNORD46.1-201ENST00000364139 104 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 COX6B1P7-201ENST00000430845 235 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC5.83□□□□□ -1.48
COL18A1P39060 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.83□□□□□ -1.48
COL18A1P39060 RNA5SP246-201ENST00000458909 119 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 VN1R105P-201ENST00000486595 910 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 AC099522.1-202ENST00000514718 367 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 RNA5SP73-201ENST00000516744 108 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.83□□□□□ -1.48
COL18A1P39060 RN7SL371P-201ENST00000578099 267 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 PRELID3BP3-201ENST00000584963 545 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 FAM27D1-201ENST00000612308 341 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 MIR7151-201ENST00000617477 60 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL18A1P39060 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
COL18A1P39060 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.83□□□□□ -1.48
COL18A1P39060 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
COL18A1P39060 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL18A1P39060 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL18A1P39060 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
COL18A1P39060 RNA5SP130-201ENST00000364431 114 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC5.83□□□□□ -1.48
COL18A1P39060 ARAFP1-201ENST00000422172 605 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 RPL5P2-201ENST00000429598 854 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 UBE2V1P3-201ENST00000439651 417 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 AL157385.1-201ENST00000446973 268 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.83□□□□□ -1.48
COL18A1P39060 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.83□□□□□ -1.48
COL18A1P39060 RNA5SP446-201ENST00000515955 82 ntBASIC5.83□□□□□ -1.48
COL18A1P39060 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.83□□□□□ -1.48
COL18A1P39060 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC5.83□□□□□ -1.48
COL18A1P39060 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
COL18A1P39060 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 AC020656.2-201ENST00000613291 5309 ntBASIC5.82□□□□□ -1.48
COL18A1P39060 AC139769.1-204ENST00000472297 1931 ntBASIC5.82□□□□□ -1.48
COL18A1P39060 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC5.82□□□□□ -1.48
COL18A1P39060 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.82□□□□□ -1.48
COL18A1P39060 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL18A1P39060 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.82□□□□□ -1.48
COL18A1P39060 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
COL18A1P39060 AC073342.2-201ENST00000595842 1800 ntBASIC5.82□□□□□ -1.48
COL18A1P39060 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
COL18A1P39060 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC5.82□□□□□ -1.48
COL18A1P39060 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.82□□□□□ -1.48
COL18A1P39060 RPL23AP83-201ENST00000434984 473 ntBASIC5.82□□□□□ -1.48
COL18A1P39060 MRPS21P3-201ENST00000436696 262 ntBASIC5.82□□□□□ -1.48
COL18A1P39060 AC079804.1-201ENST00000461922 436 ntBASIC5.82□□□□□ -1.48
COL18A1P39060 AC097486.1-201ENST00000515331 210 ntBASIC5.82□□□□□ -1.48
COL18A1P39060 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.82□□□□□ -1.48
COL18A1P39060 AP005901.4-201ENST00000577336 569 ntBASIC5.82□□□□□ -1.48
COL18A1P39060 AC010201.1-201ENST00000605051 540 ntBASIC5.82□□□□□ -1.48
COL18A1P39060 RNU4-89P-201ENST00000607443 133 ntBASIC5.82□□□□□ -1.48
COL18A1P39060 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
COL18A1P39060 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 DNAL1-202ENST00000553645 8404 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
COL18A1P39060 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC5.82□□□□□ -1.48
COL18A1P39060 AC100778.3-201ENST00000580060 1750 ntBASIC5.81□□□□□ -1.48
COL18A1P39060 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL18A1P39060 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.81□□□□□ -1.48
COL18A1P39060 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
COL18A1P39060 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
COL18A1P39060 RNA5SP124-201ENST00000362739 110 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms